Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_022969.1 Length=76217 Score E Sequences producing significant alignments: (Bits) Value seq1143 282 2e-71 seq211 269 1e-67 seq7489 251 3e-62 seq4107 105 3e-18 seq1862 91.5 7e-14 seq1863 82.4 4e-11 >seq1143 Length=31399 Score = 282 bits (312), Expect = 2e-71 Identities = 554/806 (69%), Gaps = 25/806 (3%) Strand=Plus/Plus Query 66124 ACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 66183 ||||| || ||| ||||| ||| |||||| | || || | ||| | ||||| ||| Sbjct 23731 ACCGGTTCGCTCGGCCTGGATATCGCGCTGGGCGTGGGCGGCTTGCCGCGCGGCCGCGTG 23790 Query 66184 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 66243 |||||||||||||| || ||||| || || || | || ||| || || | | || Sbjct 23791 GTGGAAATCTACGGTCCGGAATCGTCGGGTAAAACCACCCTGACCCTGCAAACCATTGCT 23850 Query 66244 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCT 66303 | ||| || || || | | ||||| ||||| || |||||| | || ||| Sbjct 23851 GAAATGCAAAAACTGGGCGGTACCTGCGCCTTTATCGATGCCGAGCACGCGCTCGACGTC 23910 Query 66304 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACT 66363 | ||||| | ||| || ||| |||| | | | || | |||||||| || Sbjct 23911 GGCTACGCGCAAAAGCTGGGCGTGAACCTGCATGAATTGCTGATTTCGCAGCCGGATACG 23970 Query 66364 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--TCG 66421 ||||||||||| ||||| ||| ||| |||||| ||| ||| ||| ||| | ||| Sbjct 23971 GGCGAGCAGGCGCTGGAAATCTGCGACGCCCTCGTGCGGTCGGGC-AGC-GTCGACCTCG 24028 Query 66422 TCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGG 66481 | ||| | ||||| ||||| || ||| ||| ||||||||| ||||||||||||| || | Sbjct 24029 TTGTCATCGACTCCGTGGCCGCACTGACGCCACGCGCCGAGATCGAAGGCGACATGGGTG 24088 Query 66482 ACAGTCACGTC--GGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66539 | || | | |||||||| |||||||| |||||||| || |||||||||| ||||| Sbjct 24089 AT--TCCCTGCCGGGCCTGCAAGCGCGCCTGATGTCGCAAGCGCTGCGCAAGCTGACCGG 24146 Query 66540 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66599 ||||| | |||| || || ||| ||| |||||||| | ||| ||||||||| Sbjct 24147 TTCCATCAACCGCACGAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGG 24206 Query 66600 CAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 66659 | || | | ||||| || |||||||| |||||||| || ||| |||||||| Sbjct 24207 CGTGATGTTCGGCAGCCCG---GAAACCACCACCGGCGGCAATGCCCTGAAATTCTACGC 24263 Query 66660 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 66719 || || ||| |||| |||| |||| || | | ||| |||||||| | |||| Sbjct 24264 GTCCGTGCGCCTGGACATCCGCCGCACCGGCTCGATCAAGTCCGGCGATGAAGTGATCGG 24323 Query 66720 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCG--CACCGCAACGCC 66777 |||| ||| ||| |||||||||||||||||| | || || ||| || | | ||| Sbjct 24324 CAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGC- 24382 Query 66778 GAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCC 66837 | ||| | || ||||||| | |||| ||||| || | |||| |||| ||||||| Sbjct 24383 -ACTTCGACATCCTGTACGGCGCCGGCACGTCGCGCGAAGGCGAAATCCTGGACCTGG-- 24439 Query 66838 GTGTCGCAGGGC---CTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAAC 66894 || ||| | | | | ||| |||| || || | |||| || ||| | | |||| Sbjct 24440 GT-TCGGACGCCAAGATCGTGGAGAAATCCGGTTCGTGGTACAGCTACAACGGC--GAAC 24496 Query 66895 G--TCGCCCAGGGCAAGCCCAAGGCC 66918 | ||| |||||||||| ||| ||| Sbjct 24497 GCATCGGCCAGGGCAAGGACAACGCC 24522 >seq211 Length=76543 Score = 269 bits (298), Expect = 1e-67 Identities = 541/798 (68%), Gaps = 13/798 (2%) Strand=Plus/Plus Query 66122 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66181 |||| |||||| | | ||||||| ||| || ||||| || || || | ||||| Sbjct 35751 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 35810 Query 66182 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66241 | || || |||||||| || |||||||| || || | || ||| || | | | | Sbjct 35811 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTG 35870 Query 66242 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66301 || | || || || || | || | || | | |||| || |||||| ||||||| | Sbjct 35871 CCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATC 35930 Query 66302 CTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGA 66359 |||| |||||| ||| ||| || || || | ||| |||| |||| || ||||| Sbjct 35931 CTGAATACGCC--GGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGA 35988 Query 66360 CACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCAT 66419 ||| || ||||| || ||||| ||| ||| | || || || || | | | Sbjct 35989 CACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGACGT 36048 Query 66420 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 66479 |||| || ||||| ||||| |||||||| || || || |||||||||| || || Sbjct 36049 GATCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGG 36108 Query 66480 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66539 |||| ||||| ||||| || || ||| | ||||| |||||| |||| || ||||||| Sbjct 36109 CGACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGG 36168 Query 66540 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66599 | |||| | | ||||| || | ||| |||||||| | || ||||||||| Sbjct 36169 TAACATCAAGAACGCCAACTGCTTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGG 36228 Query 66600 CAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 66659 | || | | ||||| || |||||||| || || || || ||| ||||||||| Sbjct 36229 CGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCTACGC 36285 Query 66660 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 66719 || ||||| |||| ||||||| | | | | | ||||||||| || |||| ||| || Sbjct 36286 TTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGG 36345 Query 66720 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGA 66779 | | ||||| || || ||||| ||||||||| ||||||||||| ||| | ||||| Sbjct 36346 TAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGA 36405 Query 66780 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 66839 |||| | | ||||| |||| |||| | | | ||| | ||||||||| ||| Sbjct 36406 GTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGATCGACCTGGGCGT 36465 Query 66840 GTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT---TCAAGTACGGGGACAAGAACGT 66896 | ||| || | || |||| || || ||||||| | | |||| ||||| | Sbjct 36466 GCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACGGCAGCAAGA---T 36522 Query 66897 CGCCCAGGGCAAGCCCAA 66914 || |||||||||| |||| Sbjct 36523 CGGCCAGGGCAAGGCCAA 36540 >seq7489 Length=570 Score = 251 bits (278), Expect = 3e-62 Identities = 397/564 (70%), Gaps = 21/564 (4%) Strand=Plus/Plus Query 66229 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66288 || ||||| || |||||||| ||| ||| |||| ||| || | ||||||||| ||| Sbjct 11 CTGCACGCAGTTGCCAATGCTCAGGCCAACGGCGGCATCGCGGCGTTCATCGACGCGGAG 70 Query 66289 CACTCCCTGGACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGG 66346 ||| | || || || || || || || | ||| || || || ||| ||| ||| Sbjct 71 CACGCACTCGATCCCGACTATGC--AGCCAAGCTGGGCGTCGATACCGATGCACTCCTGG 128 Query 66347 TGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTG 66406 | ||||||||||| || ||||||||||| || ||| ||| | || || || | Sbjct 129 TCTCGCAGCCGGACACGGGTGAGCAGGCCCTCGAAATCACCGACATGCTGATCCGTTCAG 188 Query 66407 GCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66466 ||| || ||||||||| | ||||| ||||| || || || || ||||||||| ||| Sbjct 189 GCGCCCTCGACATCGTCGTGATCGACTCCGTGGCCGCTCTTGTTCCTCGCGCCGAGATCG 248 Query 66467 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 66526 ||||||| || || ||||| |||||||| |||| || || || ||| ||||| ||| Sbjct 249 AAGGCGAGATGGGTGACAGCCACGTCGGTTTGCAGGCTCGACTGATGAGCCAGGCGCTGC 308 Query 66527 GCAAGCTCACCGGCACCATCTCCAGCAC---CAACACGCTGACGCTCTGGGTCAACCAGT 66583 ||||| ||||||| |||| || | | || ||| | | ||| |||||||| Sbjct 309 GCAAGATCACCGGTGCCATGAACAACTCGGGCACCACCGTCA---TCTTCATCAACCAGC 365 Query 66584 TGCGCGAGAAGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACGGGCGGC 66639 | |||||||||||||| ||| | ||| |||||| |||||||| || || Sbjct 366 TTCGCGAGAAGATCGG---TGTGATGTTCGGTTCTCCCGAA----ACCACCACCGGTGGT 418 Query 66640 AAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAG 66699 ||||| ||| ||||||||| || |||||| | || ||||||| |||| || ||| Sbjct 419 AAGGCACTGAAGTTCTACGCTTCGGTCCGCCTCGACATCCGTCGTATCGAAACTCTCAAG 478 Query 66700 GAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCC 66759 || || || || || || |||||||| || || |||||||||||||||||| | || Sbjct 479 GACGGTACCGACGCAGTGGGTAACCGCACTCGCGTCAAGGTCGTCAAGAACAAGGTCGCG 538 Query 66760 CCGCCGCACCGCAACGCCGAGTTC 66783 |||||| | | ||||||||| Sbjct 539 CCGCCGTTCAAGCAGGCCGAGTTC 562 >seq4107 Length=847 Score = 105 bits (116), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 66591 GAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAG 66650 |||||||||| ||| | ||| || ||| ||||| ||||||||||| || ||| Sbjct 2 GAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGCTGAA 58 Query 66651 GTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGA 66710 ||||| || || || || | ||| |||| ||||||| | ||||||| | || || Sbjct 59 ATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTGACGA 118 Query 66711 GGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66764 || |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 119 GGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 172 >seq1862 Length=5913 Score = 91.5 bits (100), Expect = 7e-14 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 60481 GACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCG 60540 |||||||| || ||| | || |||| |||||||||||| || ||||||||||| ||| Sbjct 5330 GACGGCGATGCGCTGTTCATGCGTTGCAACATCTGGCGCGAAGCAGCCGAGAACGTCGCG 5389 Query 60541 GAAAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 60598 || ||| | || | || || || |||||| ||| ||||||||||| || | Sbjct 5390 GAGAGCTTGACCCG--TGGTTCACGAGTAATCGTGAGCGGCCGGCTCAAGCAGCGTTCGT 5447 Query 60599 TCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 60658 ||| || || ||||| ||||| || ||| ||||| | || || || || ||||| | Sbjct 5448 ACGAAACTCGCGAGGGCGAAAAGCGAACTGTCGTCGAGCTCGAAGTCGATGAAATCGGTC 5507 Query 60659 CGTCGCTG 60666 | || ||| Sbjct 5508 CTTCACTG 5515 >seq1863 Length=4856 Score = 82.4 bits (90), Expect = 4e-11 Identities = 142/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 51003 CAACCACCCCAGGACCTAGCCGCCGAGTCAG-CAGTCCTCGGCGCCATGCTTCTCTCCAA 51061 || ||||| |||||| | | |||||| ||| | || ||||||| |||||| || ||| Sbjct 3709 CAGCCACCTCAGGACATGACTGCCGAG-CAGTCGGTGCTCGGCGGCATGCTGCTGAGCAA 3651 Query 51062 GAACGCCACCCCGGCCGTCATGGAGATTCTCAAGCCCGAGGACTTCTACCGCCCCAACCA 51121 | |||||| | | | |||| | ||| | || || | ||||||||||| ||| || Sbjct 3650 GGACGCCATCGCTGACGTCCTCGAGGTACTGCGTCCGGGTGACTTCTACCGGCCCGCTCA 3591 Query 51122 CGCCACCGTCTACCAGATCATCACCGACCTCTACATGGCC--GGTGAGTCCGCCGACGTC 51179 | |||||||| | | ||| |||||||||| ||| || ||| |||||||| Sbjct 3590 CCAGTCCGTCTACGACGTGATCCTGGACCTCTACA--GCCGTGGCGAGCCCGCCGACCCG 3533 Query 51180 ATCACCGTCGCCGCGGAGCTCG 51201 | || ||| |||| ||||||| Sbjct 3532 GTGACGGTCTCCGCCGAGCTCG 3511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243727991957290