Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq685 187 7e-43 seq582 165 2e-36 seq45 134 4e-27 seq1320 118 3e-22 seq1321 109 2e-19 seq833 102 2e-17 seq28 100 8e-17 seq140 84.2 6e-12 seq103 84.2 6e-12 >seq685 Length=77197 Score = 187 bits (206), Expect = 7e-43 Identities = 220/298 (74%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 23414 GGCGACCACCAAGCAGCAGAAGTTCGCCTCTGAAGCTGTCCACCACAATTTCGGTGGTGT 23473 ||||||| || |||||| ||||| ||| | | ||| || || || |||||||||| Sbjct 10893 GGCGACCGCCGAGCAGCTGAAGTCGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGT 10834 Query 23474 AGTTGGTCGCGCCGTCTTTTTCCCACTTGCGTGTCTGCAGCTTGCCGATGATCGCGCATT 23533 || || | |||||||||||||||| ||| || | || |||| || ||| | Sbjct 10833 AGCGTTTCACTCCGTCTTTTTCCCACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACT 10774 Query 23534 CACTTCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGC 23593 || || || ||||||||||| || || || ||||||| ||||||||||||||| |||| Sbjct 10773 GGCTCCCTTTTCGCAGATACTCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGC 10714 Query 23594 GGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACG 23653 ||||||| ||||| |||| ||| |||||||||||| || |||||| |||| | Sbjct 10713 GGTGCCACTCGGTACGCTCCTGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGG 10654 Query 23654 TGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 |||||||| | ||||| ||||| | |||||| | |||||| ||||||||||| Sbjct 10653 TGGCCAGGGTTATGTTCGTTACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTC 10596 >seq582 Length=79996 Score = 165 bits (182), Expect = 2e-36 Identities = 247/348 (71%), Gaps = 12/348 (3%) Strand=Plus/Plus Query 37171 GTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGACCTGGGCATCATCCCTGGCTCG 37230 || || ||||| || || | ||| || |||| || |||||||||||||| ||| Sbjct 75311 GTGACGCGCAAGGGCGCCATCTCGGCGCGGCAGGGGGAGCTGGGCATCATCCCCGGCAGC 75370 Query 37231 ATGGGTGCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTGCTCTTGC 37290 ||||| ||| |||||||| || |||||||| || | |||||||||||||| ||| Sbjct 75371 ATGGGCGCGCGCAGCTTCATCGTGCGTGGCAAGGGCAAGCCGGAATCGTTCTGCTCCTGC 75430 Query 37291 AGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCAAAACGCCGGTTCA-CAG--TC 37347 ||||| || || || | |||||||| ||| || || ||||| |||| | | || Sbjct 75431 TCGCACGGGGCGGGGCGCAGCATGAGCCGCAGCGAGGCGAAGCGCCGCTTCAACCGCTTC 75490 Query 37348 GA---GGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGATC 37404 || || | || ||||| || |||||||||||||| |||| || |||||| Sbjct 75491 GAACTGGCCGAGCAGACGGCC------GGCATCGAGTGCCGCAAGGATGGCGGCGTGATC 75544 Query 37405 GACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCTG 37464 ||||| | || || || || || ||||||| ||||||||||| || || |||| Sbjct 75545 GACGAAATCCCTGCCGCCTATAAAAACATCGACGCGGTCATGGCGCACCAGGGCGACCTG 75604 Query 37465 GTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGA 37512 ||||| | ||||| || ||||||| ||||| ||| | ||||| ||| Sbjct 75605 GTGGAAGTGGTGCATACCTTGCGCCAGGTCGTCTGCATCAAGGGCTGA 75652 >seq45 Length=185997 Score = 134 bits (148), Expect = 4e-27 Identities = 192/268 (72%), Gaps = 12/268 (4%) Strand=Plus/Minus Query 23450 TGTCCACCACAATTTCGGTGGTGTAG---TTGGTCGCGCCGTCTTTTTCCCACTTGCGTG 23506 |||| ||||| ||||| |||||||| ||| | ||||||||||||||||| ||| | Sbjct 40342 TGTCGACCACGATTTCAGTGGTGTAACGCTTGAT---GCCGTCTTTTTCCCACTCGCGGG 40286 Query 23507 TCTGCAGCTTGCCGATGATCGCGCATTCACTTCCCTTGCGCAGATACTCGCCGGCAATCT 23566 | ||||||||||| ||| | | || |||||||| || || ||||| |||| Sbjct 40285 TTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACCGGCGATCT 40226 Query 23567 CGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCTTTT---CCTTGCGCTCGC 23623 | || ||||||||||| | | || |||||||||||||| || | |||| || || Sbjct 40225 CTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTT---CTGGC 40169 Query 23624 CGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGC 23683 |||| |||||||| |||| ||| || ||||| || | |||| ||||| | | Sbjct 40168 CGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTAC 40109 Query 23684 CGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 |||| ||| |||||| ||||| || || Sbjct 40108 CGTTCGGCAAGTAGCGAACTTCGGGATC 40081 >seq1320 Length=7270 Score = 118 bits (130), Expect = 3e-22 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 |||||||||||||| ||||| || | || |||| ||||||||| | ||| ||||| ||| Sbjct 6196 CCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGC 6137 Query 23599 CATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCC 23658 ||||| |||| ||| ||| || ||||| ||||| |||||||||||||||||| Sbjct 6136 CATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCACGCCAGGTTTCCGACGTGGCG 6077 Query 23659 AGGCTG-ATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATTACC 23717 | ||| | ||| || || | ||||| | | ||| || |||||||| || || || Sbjct 6076 A-CCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCTTTTCC 6018 Query 23718 CAGGCGGCC 23726 |||||| || Sbjct 6017 CAGGCGTCC 6009 >seq1321 Length=3862 Score = 109 bits (120), Expect = 2e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 |||||||||||||| || || || | || |||| ||||||||| | ||| ||||||||| Sbjct 2812 CCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGC 2753 Query 23599 CATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCC 23658 ||||| |||| ||| ||| || ||||| ||||| |||| |||| || |||||| Sbjct 2752 CATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCC 2693 Query 23659 AGGCTG-ATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATTACC 23717 | ||| | ||| || || | ||||| | | ||| || |||||||| ||||| || Sbjct 2692 A-CCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 2634 Query 23718 CAGGCGGCCAATCAGGTCTACTTTGTT 23744 ||| || || | ||| || ||||| Sbjct 2633 CAGACGCCCGACGAGGATGACCTTGTT 2607 >seq833 Length=8904 Score = 102 bits (112), Expect = 2e-17 Identities = 231/336 (69%), Gaps = 21/336 (6%) Strand=Plus/Minus Query 23418 ACCACCAAGCAGCAGAAGTTCGCCTCTGAAGCTGTCCACCACAATTTCGGTGGTGTA--G 23475 |||||| || ||| | | | ||| ||| | |||| || | ||||||||||||||| | Sbjct 8577 ACCACCCAGGAGCTGCATTCTGCC-CTGCA--TGTCGACGATAATTTCGGTGGTGTACCG 8521 Query 23476 TTGGTCGCGCCGTCTTTTTCCCACTTGCGTGTCTGCAGCTTGCCGATGATCGCGCATTCA 23535 || | | ||||||||||||||| ||||| || ||||| || ||| | || | Sbjct 8520 TTTGATAC--CGTCTTTTTCCCACTCTCGTGTTTGAAGCTTACCTTCGAT---GTATAC- 8467 Query 23536 CT----TCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGAC 23591 || ||| || ||||||||||| || || || || ||||| || || || || || Sbjct 8466 CTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAAC 8407 Query 23592 GCGGTGCCATTCGGTCTTTTC--CTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCC 23649 |||||||||||||||||||| ||| || || || |||||||| |||| || Sbjct 8406 ACGGTGCCATTCGGTCTTTTCGACTT--TCTGTCCCGTTTGCTTGTCAGTCCACTGCTCA 8349 Query 23650 GACGTGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGG 23709 || || ||||||| ||| || |||| ||||| | | |||||| ||| || Sbjct 8348 CTTGTTGCAAGGCTGAGATTGGTTACTGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGA 8289 Query 23710 TCATTACC-CAGGCGGCCAATCAGGTCTACTTTGTT 23744 || | ||| |||| ||||| || | ||||| || Sbjct 8288 TCTTGACCACAGG-TGCCAACCAAGATCACTTTATT 8254 >seq28 Length=112092 Score = 100 bits (110), Expect = 8e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| |||| ||||| ||||||||| |||| | ||||||||||||| |||||||||| Sbjct 21305 ATGGCGCACCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATC 21364 Query 21122 CAGCTGAGCTACGGG 21136 ||||||||||||||| Sbjct 21365 CAGCTGAGCTACGGG 21379 >seq140 Length=92187 Score = 84.2 bits (92), Expect = 6e-12 Identities = 88/114 (77%), Gaps = 4/114 (4%) Strand=Plus/Minus Query 34842 GTGTGTGAGGGTTATTCGACGGGCGCCAGCATCCACATGGCAAC--CGGTCACTGCGTGG 34899 ||||||||||| || | |||||||| ||| | |||||||| || || |||||| | | Sbjct 85007 GTGTGTGAGGGCTACGCCACGGGCGCAAGCCTGCACATGGCGACGTCGCTCACTG--TCG 84950 Query 34900 CCGTGGCGTTCGACGCGGGCAACGTGCCGACCATTGCCAGAGCCATGCGCGAGC 34953 || | || ||||||||||||||| ||| | | | ||| ||||||||||||| Sbjct 84949 CCATCGCCTTCGACGCGGGCAACCTGCTGCCTGTCTCCAAGGCCATGCGCGAGC 84896 >seq103 Length=49467 Score = 84.2 bits (92), Expect = 6e-12 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 21072 CGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCT 21131 |||||||||||||||||||||||| ||| || | || ||| | ||||||||||||||||| Sbjct 32705 CGACAGGATTCGAACCTGTGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCT 32646 Query 21132 ACG-GGGCCGATT 21143 ||| | || |||| Sbjct 32645 ACGAGTGCAGATT 32633 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 21072 CGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCT 21131 |||||||||||||||||||||||| ||| || | || ||| | ||||||||||||||||| Sbjct 32556 CGACAGGATTCGAACCTGTGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCT 32497 Query 21132 ACG 21134 ||| Sbjct 32496 ACG 32494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139260035898060