Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq593 100 4e-16 seq13574 84.2 3e-11 seq48 84.2 3e-11 >seq593 Length=58250 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| |||| || | || || || || |||||| | || || || | Sbjct 29378 TGCAAATATTTGTAAAGACCCTCACTGGCAAGACTATTACTTTGGAAGTCGAGGGATCTG 29437 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || | || || ||| || ||||| |||||||||||||||| Sbjct 29438 ACACCATCGACAATGTTAAGACCAAGATTCAAGACAAGGAAGGAATTCCACCCGATCAAC 29497 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||||||||| || || || ||| | || ||| | || | | || || || | Sbjct 29498 AAAGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCCGACTACAACA 29557 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| ||||||| || | || || | ||||||| Sbjct 29558 TTCAAAAGGAATCTACTCTCCATTTGGTTCTTCGTCTACGTGGAGGTA 29605 >seq13574 Length=204 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| ||||||| ||| ||||| ||| |||||||| |||||||| |||||| Sbjct 6 GACACTATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATTCCACCAGATCAA 65 Query 146151 CAAAGACTCATTTTTGCAGGTAAA 146174 ||| | || ||||||||||||||| Sbjct 66 CAACGTCTTATTTTTGCAGGTAAA 89 >seq48 Length=44992 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| ||||| || || || || || || |||| || || | Sbjct 21949 TGCAAATTTTCGTAAAGACATTGACTGGCAAGACCATCACACTTGAGGTCGAGGGATCTG 22008 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || || | || || ||| || ||||| || ||||||||||||| Sbjct 22009 ATACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAAC 22068 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || || || ||| | || ||| | || || | || || || | Sbjct 22069 AACGTCTCATTTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTATCCGACTACAACA 22128 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 ||||||| || || ||| | || || ||| Sbjct 22129 TACAAAAGGAGTCTACTCTTCACTTGGTA 22157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786028771744600