Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq593 143 2e-29 seq48 131 1e-25 seq420 123 2e-23 seq1623 98.7 8e-16 seq355 98.7 8e-16 seq2393 89.7 4e-13 >seq593 Length=58250 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || |||||||| || || ||||| ||||||||||| || || | Sbjct 29603 CCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAG 29544 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| |||||||| || || || | || | |||||| ||||| || ||| Sbjct 29543 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGA 29484 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| ||| || || || ||| | || | |||||||| || || Sbjct 29483 ATTCCTTCCTTGTCTTG-AATCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTCGAC 29425 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | ||| ||||| |||||||| | ||| || |||||||| ||||| Sbjct 29424 TTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| ||||| || ||||| ||||||||||| || || | | |||||| | Sbjct 29363 CGGAGTACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCA 29304 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||| || || ||| | || | | ||| ||||| || || || || || ||| Sbjct 29303 TCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTG 29244 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || || |||||| | || | |||||||| || ||||| || || || Sbjct 29243 TCTTG-AATCTTGGTCTTGACATTGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGAT 29185 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| ||||| || ||||| || ||||| Sbjct 29184 GGTCTTTCCAGTCAAGGTCTTTACAAAGATTTGCAT 29149 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| || || || || ||||||||||| || || | || || ||| Sbjct 29820 ACGGAGAACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACC 29761 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| |||||||| || || ||| | || | | ||| ||||| || || || ||||| || Sbjct 29760 ATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTT 29701 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || || || || |||||| | || | |||||||| || || || | || | Sbjct 29700 GTCCTG-GATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAA 29642 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| |||||||| | || || ||||| || ||||| Sbjct 29641 TAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| || || || ||||||||||| || || | | |||||| | Sbjct 29135 CGGAGTACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCA 29076 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||| || || ||| | || | | ||| ||||| || ||||| || || ||| Sbjct 29075 TCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTG 29016 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| || || || || || | || | |||||||| || || || | || || Sbjct 29015 TCTTG-GATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGAT 28957 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | || || ||||| || ||||| Sbjct 28956 GGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 >seq48 Length=44992 Score = 131 bits (144), Expect = 1e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 |||||| | | ||| || ||||||||||| || || || ||||||||||| || || | Sbjct 22631 TCCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGA 22572 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 |||| |||||| ||| ||||| || ||||| ||| | || | |||||| ||||| || | Sbjct 22571 CAAT-GTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTG 22513 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 | || || || |||||||| || || || |||||| | || | ||||| || || Sbjct 22512 GGATTCCTTCCTTGTCTTG-GATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCG 22454 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| | || ||||| |||||||| | || || || || |||||||| Sbjct 22453 ACTTCCAAGGTGATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 22404 Score = 120 bits (132), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || || |||||||||||||| || | | ||||| Sbjct 22391 ACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCC 22332 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || |||||||| || || ||| | || | | ||||||||| || ||||| ||||| || Sbjct 22331 GTCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTT 22272 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || || || ||| | || | || ||||| || || || || || | Sbjct 22271 GTCTTG-AATCTTGGTCTTTACATTGTCGATGGTATCAGATCCCTCGACCTCCAGTGTGA 22213 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || ||||| || || || ||||| ||||||||| Sbjct 22212 TGGTCTTTCCAGTCAATGTCTTGACAAAGATCTGCATT 22175 Score = 118 bits (130), Expect = 8e-22 Identities = 171/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 29550 TTATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTT 29609 |||| ||| ||||| | | ||| || ||||| ||||| || || || ||||||||||| Sbjct 22868 TTATTATTGACCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTT 22809 Query 29610 ATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTG 29669 || || | | |||||| ||| ||||| || |||||||| | || | | ||| || Sbjct 22808 GTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGTTG 22749 Query 29670 ATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAG 29728 ||| || || || || || |||||||| ||| || || ||||| | || | || |||| Sbjct 22748 ATCGGGTGGGATTCCTTCCTTGTCTTG-AATCTTGGTCTTGACGTTGTCGATGGTATCAG 22690 Query 29729 AAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || | ||| ||||| |||||||| | || || || || ||||||||| Sbjct 22689 ATCCCTCAACCTCCAAAGTAATAGTCTTGCCAGTGAGAGTCTTTACGAAAATCTGCATT 22631 >seq420 Length=40905 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || ||||| ||||| || || |||||||| ||||| || || | Sbjct 13546 TCCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGA 13605 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| |||||||| ||||| ||| | || | | ||| ||||| || || Sbjct 13606 GAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGG 13665 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| || ||||| ||| || || ||||| | || | || ||||| || | Sbjct 13666 AATACCCTCCTTATCTTG-AATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAA 13724 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || | || ||||| |||||||| | || || || || ||||||||| Sbjct 13725 CCTCCAAGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATT 13774 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || ||||| ||||| ||||| || ||||||||||| || || | Sbjct 14002 TCCTCCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA 14061 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| || || || ||||| || |||||| | || | |||||| ||||| || || Sbjct 14062 AAGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGG 14121 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || |||||||| || || || ||||| | || | ||||| || || | Sbjct 14122 GATTCCTTCCTTGTCTTG-GATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGA 14180 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||| || || || |||||||| || || || ||||| || |||||| Sbjct 14181 CCTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCATT 14230 Score = 122 bits (134), Expect = 7e-23 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 29550 TTATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTT 29609 |||| |||| ||||| | | ||| || ||||||||||| || || |||||||| ||||| Sbjct 13309 TTATTGTTGACCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCTTTTTGTATGTT 13368 Query 29610 ATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTG 29669 || || | | |||||| ||| || ||||| ||||||||| | || | || |||||| Sbjct 13369 GTAGTCAGAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTG 13428 Query 29670 ATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAG 29728 || || || || || || |||||||| || || || |||||| | || | ||||| | Sbjct 13429 GTCGGGTGGGATTCCTTCCTTGTCTTG-GATCTTGGTCTTGACATTGTCGATGGTGTCTG 13487 Query 29729 AAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || | || || || || ||||| | || || || || ||||||||| Sbjct 13488 ATCCCTCAACCTCCAAGGTAATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 13546 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || ||||| ||||| ||||| || ||||||||||| || || | Sbjct 13774 TCCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA 13833 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| |||||||| ||||| ||| | || | | ||| ||||| || || Sbjct 13834 TAGAGTGCGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGG 13893 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || |||||||| || || || || ||| | || | ||||| || ||| | Sbjct 13894 GATTCCTTCCTTGTCTTG-GATCTTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGA 13952 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || || || ||||| || || || || || ||||||||| Sbjct 13953 CCTCCAGTGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCATT 14002 >seq1623 Length=5066 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||||||||| || || || ||||| ||||| || || | | Sbjct 102 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAA 161 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || ||||| || || ||| | || | | ||| ||||| || || Sbjct 162 AGAGTACGACCATCCTCAAGTTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGG 221 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| || || || || || | || | || ||||| || || Sbjct 222 ATTCCTTCCTTGTCTTG-GATCTTGGTCTTTACGTTCTCGATGGTATCAGAGCCCTCAAC 280 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || ||||| | |||||||||||| || ||||| Sbjct 281 CTCCAAGGTGATGGTCTTACCAGTCAGGGTTTTAACAAAGATTTGCAT 328 >seq355 Length=81473 Score = 98.7 bits (108), Expect = 8e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 29605 ATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTT 29664 ||||| || || | || || ||| ||| |||||||| || || ||| | || | | | Sbjct 81473 ATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATAAGACGT 81414 Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 |||||||| || || || || || |||||||| | | || || ||||| | || | ||| Sbjct 81413 TGCTGATCGGGTGGGATTCCTTCCTTGTCTTGGA-TCTTGGTCTTGACGTTGTCGATAGT 81355 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| ||| || || || || || || ||||||||||| || || ||||| || || Sbjct 81354 GTCAGATCCTTCGACCTCTAGTGTGATGGTCTTGCCAGTTAATGTCTTTACAAAGATTTG 81295 Query 29784 CAT 29786 ||| Sbjct 81294 CAT 81292 >seq2393 Length=1004 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||||||||| | | || || ||||||||||| |||||||| ||||||||||| || || Sbjct 868 TTGTCCTCCACGAAGGCGGAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAGTC 927 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | || |||||| || |||||||| || || || | || | |||||| || || || Sbjct 928 GGAAAGAGTGCGACCGTCTTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGG 987 Query 29676 CGGAATACCCTCTTTGT 29692 || || || || |||| Sbjct 988 TGGGATTCCTTCCTTGT 1004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385153448499705