Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023498.1 Length=62466 Score E Sequences producing significant alignments: (Bits) Value seq5362 156 2e-33 >seq5362 Length=3136 Score = 156 bits (172), Expect = 2e-33 Identities = 320/469 (68%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 56168 CAGCTCGGCACCCTCGGCGGCGGTAACCATTTCATCGAGCTGTGCCTCGATCACCTTGAC 56227 |||||||| || || ||| |||||||| ||||||||| || |||||| | ||| Sbjct 562 CAGCTCGGAACGCTGGGCTCTGGTAACCACTTCATCGAGGTGACACTCGATGAAAGCGAC 503 Query 56228 CGGGTGTGGCTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGCAACAAGATCGCCCAGCGG 56287 | || ||||||||||||||||| || || || |||| |||||| |||| |||| Sbjct 502 GGCGTCTGGCTGTTCCTGCACTCGGGAAGCCGCGGTATCGGAAACAAGCTCGCGCAGCAT 443 Query 56288 CATATCTCTGCGGCGCAGGGGTATTGCCAGGCGCAAGGGCTGCA--CGTCCCGCACCGCG 56345 || ||| || ||| | ||| || || | | || | ||||| ||| | Sbjct 442 CACATCAAGATCGCCAAGGACTTGTGCGAG-CGGTGGTACATCAACCTTCCCGATCCG-G 385 Query 56346 ACCTCGCGTACCTCGTCGAGGGCACTGTCGAGTTCGACCGCTACCTCGTCGAGCTGCGGT 56405 | || || ||||| |||||| || ||| |||||| ||| || ||| || | Sbjct 384 ATCTTGCCTACCTGGTCGAGAAGACACCCGAATTCGACTCGTACATCACCGATCTCAACT 325 Query 56406 GGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAGATGATGGACCGTTTCGCGCAGGCGT 56465 |||| |||| ||||| | |||||||| |||||||||||||| ||| | ||| | Sbjct 324 GGGCTCAGCACTTCGCTTTGCTCAACCGCGAAGAGATGATGGACCGCGTCGTGAAGGACT 265 Query 56466 TCCGGCATTGGATCGGCGCCGAC--GCCC-CGATCGACGAGCTGGTCGTCGAGACGATCA 56522 || ||||| || || | || | |||| ||||| ||| | |||||| ||||| Sbjct 264 TCGCGCATTTCATGGGAGACGGCAAGCCCGCGATCATCGAC---GAAGTCGAGCGGATCA 208 Query 56523 ACACGCATCACAACTACACGCAGAAGGAGCTGCACGGCGGCCGTGAGGTGTGGTTGACCC 56582 || || ||||||| ||| ||||||||| | ||| ||| | | |||||| ||| || Sbjct 207 ACTGCCACCACAACTTCACCCAGAAGGAGTTCCACATGGGCAGGGGTGTGTGGCTGAGCC 148 Query 56583 GCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCCTGATTCCCGG 56631 | |||||||||||| | || ||||||| || || || || ||||| Sbjct 147 GTAAGGGTGCGATCAAGGCAAACGAGGGCACGCCCGGGCTCATCCCCGG 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199732302684735