Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023563.1 Length=68262 Score E Sequences producing significant alignments: (Bits) Value seq5284 86.0 3e-12 >seq5284 Length=2092 Score = 86.0 bits (94), Expect = 3e-12 Identities = 203/302 (67%), Gaps = 5/302 (2%) Strand=Plus/Minus Query 40433 CGTCCGGTTTCGGCCCGAGGTGGGGCAGCCAGCACCGTGGCCTCGATTTCGCCGCCAAGG 40492 ||||| ||||| || | ||||| | | | ||| ||| |||| ||||||| | | Sbjct 1250 CGTCCCCGTTCGGGCCTCGCTGGGGAACCGAACACAAAGGCGTCGACTTCGCCGGCCCCG 1191 Query 40493 ACGGCACACCGATCTACGCTGCGCAGGGCGGCACCGTGGCCTACATCGGCAGAGCCGACG 40552 ||| |||||||||||||| || | | |||| || || | | ||| || || Sbjct 1190 TCGGGACACCGATCTACGCGGCACTCGACGGCGTCGCGGTCAAGGCCGGGCCCGCATCCG 1131 Query 40553 GTTTTGGGCAATGGATCGTGATCGACCACCCCGCAGCCGACGGTGGCGGCACGACCGTCT 40612 | || ||| | ||||||||| ||||| | || | || | | | ||||||| Sbjct 1130 GGTTCGGGAACTGGATCGTGCTCGACTCGCTCGTCGACGGCAAACCTGTGAGCACCGTCT 1071 Query 40613 ACGGACACATGTGGGACG-CGTTCGCCACCGGACTACGTCAAGGGCAGCGCGTCGAGGCC 40671 |||| ||||||| |||| || | || | | | ||| |||| |||| ||| ||||| Sbjct 1070 ACGGCCACATGTTCGACGACGGTGTCCTC--GTC-ACG-GAAGGCCAGCAGGTCAAGGCC 1015 Query 40672 GGGCAGCTCATCGCCTACGTCGGCACGAACGGTCAATCGACCGGCCCACATCTGCACTTC 40731 || | | |||||| || |||| | ||||| ||||| |||||| |||| |||| ||| Sbjct 1014 GGCGACCACATCGCGAACATCGGAAACAACGGCCAATCCACCGGCGCACACTTGCATTTC 955 Query 40732 GA 40733 || Sbjct 954 GA 953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218276336938515