Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq685 217 4e-52 seq400 203 9e-48 seq816 150 5e-32 seq833 113 1e-20 seq45 109 2e-19 seq737 86.0 2e-12 >seq685 Length=77197 Score = 217 bits (240), Expect = 4e-52 Identities = 235/307 (77%), Gaps = 7/307 (2%) Strand=Plus/Minus Query 30085 GTCGACGATGATCTCTGTTGTGTAGCGGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGT 30144 |||||||| |||||| || |||||||| | | ||||| | || |||| || || Sbjct 10856 GTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCC---CACTCGCGGGT 10800 Query 30145 TCTGAGTGAACCCTCGACGTA-CAGTTGCTGACCCTTCTTTACG-TGCTGCCCGACGATC 30202 | ||| | || |||||||| || | ||| ||||| | | | || || |||| Sbjct 10799 GCGGAGAGTGCCTTCGACGTAGCACTGGCT--CCCTTTTCGCAGATACTCACCCGCGATT 10742 Query 30203 TCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCG 30262 || || | ||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||| Sbjct 10741 TCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCCTGCTGCTGGCCG 10682 Query 30263 GTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCG 30322 |||||||| || |||||||| ||||||||||| ||||| ||||| || || || |||||| Sbjct 10681 GTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTTACGGCGTTGCCG 10622 Query 30323 TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTA 30382 || || | ||||| ||||||||| || ||| ||||||| || ||||| |||||||| Sbjct 10621 TTCGGGGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAGAATCACTTTGTTG 10562 Query 30383 ACGCCTC 30389 ||||||| Sbjct 10561 ACGCCTC 10555 >seq400 Length=38681 Score = 203 bits (224), Expect = 9e-48 Identities = 501/746 (67%), Gaps = 18/746 (2%) Strand=Plus/Plus Query 1072 TGGGAGGTTGCAGAAGGTGGCCTAACTGACGGTGAGCC----ATT--CTGGTTCGTGTTC 1125 ||||| ||||| ||||||| || || |||| || | ||| |||| | | ||| Sbjct 8191 TGGGAAGTTGCTGAAGGTGCGCTGACGGACGAAGACACGGAAATTATCTGGGTGGCGTTT 8250 Query 1126 GGGAACCCCACAAGGAACACAGGTCGATTCCGGGAGTGCTGGCGTAAGTTCCGCCATCGC 1185 |||||||| || | ||||| || || ||||| || |||| || |||| | || ||| Sbjct 8251 GGGAACCCGACGCGTAACACCGGGCGCTTCCGCGAATGCTTCCGCAAGTACAAGCACCGC 8310 Query 1186 TGGAAGACCAGGCAGATCGATAGTCG-ATCGGCCAAGATGACCAACAAAGACCTAATCAA 1244 |||||| | |||||| || || || | || ||| || ||||| | | | | Sbjct 8311 TGGAAGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGC-ACAAACAAGCAGCAGCTGCA 8369 Query 1245 GCAATGGGCCGCGGACTACGGCGAAGACTCCGACTTCTTCAAGGTACGTGTTCGCGGTCT 1304 | |||||| | ||||||||||||||| ||||||| | ||||| || || || || | Sbjct 8370 GAAATGGGTTGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTCCGCGTGCGGGGGAT 8429 Query 1305 GTTCCCCTCGTCCTCTGATCTGCAATTCATCGGCACTGGCCTGGTCGATGCCGCAATGGC 1364 ||||| | || || || || || ||| || ||||| || | || ||| Sbjct 8430 CTTCCCTGACGCGTCAGAACTCCAGTTTATCCCAACAGGCCTTACAGACGAGGCCATGAA 8489 Query 1365 ACGCGTCGTGACTGAGGCGATGGTAAGCCACGCGCCAGTTGTTATCGGCGTTGACCCGTC 1424 || || || || | | | ||| ||||| || || |||||||||| |||||| | Sbjct 8490 GCGGGTGGTTACCGCCGGGCAGGTTGCTCACGCTCCTGTGATTATCGGCGTCGACCCGGC 8549 Query 1425 GTGGTCAGGCGATGACGAATTTGCGATCTATATGCGGCAGGGGCTGCATAGCAAGCTGAT 1484 || || || | ||| || | ||| || |||||||||||||||| ||||| || | Sbjct 8550 GTATTCCGGAGTTGATGACGCGGTGATATACCTGCGGCAGGGGCTGCACAGCAAAGTGCT 8609 Query 1485 CGCAACTCACCAGAAGTCTGATGACGACGTTCTGATGGCTCAGCGTATTGCCCAGCTGGA 1544 | || | | ||| | ||||| | | |||||| |||| || ||| | | || Sbjct 8610 CTGGACCGGCAACAAGACCACCGACGATTTGATTATGGCTAAGCGAATCGCCGACTTTGA 8669 Query 1545 AGACCAGTACAAGGCCGACGCGGTATTCGTCGACTTTGGCTATGGCACAGGCAT--TGT- 1601 |||||||||| |||| |||||||| ||| ||||||| || || ||||| || | || Sbjct 8670 AGACCAGTACCAGGCTGACGCGGTGTTCATCGACTTCGGTTACGGCACCGGGCTGAAGTC 8729 Query 1602 CAGCGCGGCTCGAGCAATGGGGC-GCAACTGGACGCTTGTGCAGTTCGGGGGTGCCTCAA 1660 || || | || || |||||| | | ||| ||| | | |||||| || | ||| | Sbjct 8730 CATCG-GTGACG-GC--TGGGGCAGGACATGGCAGCTAATCCCGTTCGGCGGCGGCTCGA 8785 Query 1661 GCGATCCGGCAATGCTGAACAAGCGTGGCGAGATCTGGAACGCGATG-AAGGAATGGCTC 1719 |||||| ||||| || ||||| || ||||| | ||| | || ||| ||||| Sbjct 8786 CCGATCCCCAGATGCTAAATAAGCGCGGAGAGATGTTCAAC-AGCTGCAAGACGTGGCTG 8844 Query 1720 AAGGCTGGCGGCGAACTGAACGACCAGCAGACCGCAGACGAGATCTCGGCGCCTGAGTAT 1779 ||| ||||||| ||| |||||||| |||| || | || | || ||| | ||||| Sbjct 8845 AAGCTAGGCGGCGCGCTGGACGACCAGGAGACGGCTAATGACCTGTCTGCGGCAGAGTAC 8904 Query 1780 CGCGTCAAGCTCGACGGCAAGATCGT 1805 |||| | | |||||||||||||| Sbjct 8905 AAAGTCAGGGTGGACGGCAAGATCGT 8930 Score = 93.3 bits (102), Expect = 1e-14 Identities = 200/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 4937 GATTGCTGAGCTGCTGTCCCAAGAAAACGAGATGCTGCTGGACATGCCCTG-GTACGAGG 4995 ||||| || || || ||||| |||||| || ||| ||||||| | ||| |||| Sbjct 13348 GATTGTCGAACTCCTTTCCCAGACAAACGAAATCCTGACGGACATGATGTTCGTA-GAGG 13406 Query 4996 GCAACCTGCCCACCGGTTCGCGCATCACCACCCGCACCGGCCTGCCGGATGTGATCTACC 5055 |||||||||| || || |||| ||| || | || |||| || || | | Sbjct 13407 GCAACCTGCCAACAGGGCACCGCACCACTGTGCGATCTGGTTTGCCATCTGCGACATGGC 13466 Query 5056 GCAAGCTGAACAGTGGTGTGCCGCCGAGCAAATCGACCACCGCGCAAGTCGACGAGGCAT 5115 || ||||||| ||||||| ||| |||||||| ||||||| || || || | | Sbjct 13467 GCTTGCTGAACTACGGTGTGCAGCCAAGCAAATCAACCACCGTACAGGTTACAGACTCCT 13526 Query 5116 GCGGCATCCTCGAAGCTCGCGGTCAGGTTGACGTGGACTTGGC-GATGCTGAATGGCAAC 5174 |||| || || ||| | | | ||||||| | |||| ||| ||||| ||||| Sbjct 13527 GCGGGATGCTGGAAACCTATGCTGAGGTTGATAAGTCTCTGGCTGAT-CTGAACGGCAAT 13585 Query 5175 ACCGCAGGTTTCCGCCTGTCTGAGTCGCGTGCATTCATGGAAGCAATGAACCAG 5228 || || | ||||| ||||| || ||||||||||| |||| ||||||||| Sbjct 13586 ACTGCTGAATTCCGTCTGTCGGAAGACCGTGCATTCATCGAAGGTATGAACCAG 13639 >seq816 Length=14434 Score = 150 bits (166), Expect = 5e-32 Identities = 300/447 (67%), Gaps = 42/447 (9%) Strand=Plus/Minus Query 31234 TTCAACGATCCGCTCGGCCTCGTCCTGGTCGTATATGCCGGCGAACCCGAACGCGAGGCG 31293 ||| || || |||||||| || |||| ||| || || || || || ||||| || || || Sbjct 8324 TTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGACG 8265 Query 31294 TGCGCACTGGATCATTGCCTTGTGGCGAAGCATCCGGCGCGGATGGGACTGCCAAGGCTG 31353 || ||||| ||||| || || || || | |||||| ||||| |||||||| || Sbjct 8264 GGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGTCC 8205 Query 31354 GGTG--TTC--------CGC-------------TT-------GCACTCGGCCATGTACTC 31383 |||| ||| ||| || ||| || |||| |||| Sbjct 8204 GGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCACTC 8145 Query 31384 AGTCGCGCTGATGGCATGGCTGCGGTCCTTCCGATAGATCTTGCAGGTGCA---TTCGGT 31440 || ||| ||| | ||| |||||||||| || || ||| ||| ||||| ||| | Sbjct 8144 GGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAATCCGGCATGTGCAGGATTCATT 8085 Query 31441 TCCCTGCTGGTCCATTGAGAATTCCATGCCATCGAACTGTGGGTTCTCGTTGATGATCCG 31500 |||||| || || ||||| ||||| ||||| |||| || |||||||| || Sbjct 8084 GTCCTGCT----CA-----AAGTCCATACCATCAAACTGCTGGTTTTCATTGATGATGCG 8034 Query 31501 AGCCCAGCCATCCACGCCAACAACTGGCACGATGCCGTTGTTCTTGTCGGGGAATGCGTA 31560 | ||||||||| ||||| || || || ||||||||||| | ||| || ||||| ||||| Sbjct 8033 GGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTA 7974 Query 31561 CAACTCCTTGGTGAAGGGGTTCAGTTTGTACTGGTCTGCCACGATCAGCAGGGCGACCAT 31620 | || || || | || || || |||||||| || |||||||||| |||| | Sbjct 7973 AATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCGATGAA 7914 Query 31621 CTGCGAATCATTGACCTGGCCCTTGAA 31647 ||||| ||| || | | ||| || || Sbjct 7913 CTGCGCATCGCTGGCATCGCCTTTAAA 7887 >seq833 Length=8904 Score = 113 bits (124), Expect = 1e-20 Identities = 220/322 (68%), Gaps = 5/322 (2%) Strand=Plus/Minus Query 30067 CTGCAT-CTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCCTGACCGTCCT 30125 |||||| |||||| |||||||||||||| || || || ||||| || | |||||| | Sbjct 8565 CTGCATTCTGCCC-TGCATGTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTT 8507 Query 30126 GCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCTGACCCTTCTTTA 30185 || |||| ||| ||| || ||| |||| ||| | ||| || ||| | Sbjct 8506 TTTCC---CACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCA 8450 Query 30186 CGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGC 30245 | || || |||| || || | ||||| || || || |||||||||||||| Sbjct 8449 GATACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCT 8390 Query 30246 GCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGT 30305 || || ||| || || |||||||| |||| ||| || || || ||| ||| | Sbjct 8389 TTTCGACTTTCTGTCCCGTTTGCTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGAT 8330 Query 30306 TGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAA 30365 |||| || ||||| ||||| || | ||||||||||| || || ||| | |||||| Sbjct 8329 TGGTTACTGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAA 8270 Query 30366 CCAGAATGACTTTGTTAACGCC 30387 ||| || ||||| || ||||| Sbjct 8269 CCAAGATCACTTTATTTACGCC 8248 >seq45 Length=185997 Score = 109 bits (120), Expect = 2e-19 Identities = 226/334 (68%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||| | || ||||| || ||||||||||| | ||| || || ||||| || | Sbjct 40370 CCGCCCAGCAGTTGCATGGTGCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCT-- 40313 Query 30116 TGA--CCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCT 30173 ||| ||||| | || |||| || ||| || || |||| ||| | ||| Sbjct 40312 TGATGCCGTCTTTTTCC---CACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCG 40256 Query 30174 GACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGT 30233 ||| || | || | ||| ||||||| || | ||| ||||| | | ||| |||| Sbjct 40255 AACCTTTGCGCAGGTATTCACCGGCGATCTCTGCAACCTTGCCGAACATCGACACACGGT 40196 Query 30234 GCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGG 30293 |||||||||| ||| | ||||||||| |||||||| |||| |||||||| | Sbjct 40195 GCCATTCGGTTTTCTCGACCTTCTGGCCGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCG 40136 Query 30294 CGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCAC 30353 | || | | ||||||||| || || ||||| |||| |||||| ||| || || | Sbjct 40135 CCAGACTCAGGTTGGTCACGGCGTTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGC 40076 Query 30354 CGACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387 || | || |||| |||||||||||||| || Sbjct 40075 CGCATGTACCGACCAATATGACTTTGTTAACCCC 40042 >seq737 Length=22238 Score = 86.0 bits (94), Expect = 2e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 30175 ACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTG 30234 ||| || || | || ||| |||||||| ||||||| ||||||||| | ||||| Sbjct 8252 ACCTTTTTTCAGGTACTGGCCGACGATTTCCGCCAGGCGGCCGAAGAACGAAATACGGTG 8193 Query 30235 CCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGC 30294 ||| || || || | ||| | ||| || | ||||||| | | | ||||| Sbjct 8192 CCACTCTGTCAATTCTTTTTGTTCGCCCGTGTTGCGGTCCTTCGACTTGTACGAAGTGGC 8133 Query 30295 GAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACC 30354 | || |||||||| | ||| | |||| | ||||| ||||| |||||||||||| || Sbjct 8132 CACGGCGATGTTGGCGATCGCGTCGCCGCTAGGCATGTAGCGGATTTCCGGGTCACGGCC 8073 Query 30355 GACGTTGCCAACCAGAATGACTTTGTTAAC 30384 | ||||| || | ||||||||||| || Sbjct 8072 CAGATTGCCGACGATGATGACTTTGTTGAC 8043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145614178968720