Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq4094 89.7 6e-13 seq165 84.2 3e-11 >seq4094 Length=1744 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 152587 TGGCGGAATTGGTAGACGCGCTGGTTTTAGGTACCAGTGTCTTATGACGTGGAGGTTCAA 152646 |||||||||||| ||||||||||| ||||||| ||||||||| | ||||||| ||||||| Sbjct 1550 TGGCGGAATTGGCAGACGCGCTGGATTTAGGTTCCAGTGTCTCAGGACGTGGGGGTTCAA 1609 Query 152647 GTCC 152650 |||| Sbjct 1610 GTCC 1613 >seq165 Length=230050 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19496 CATTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCG 19555 |||||| | ||||||||| ||||||||| | ||||||||||||| | |||||||||||| Sbjct 48884 CATTCCGCGATAGCTCAGTTGGTAGAGCAAATGACTGTTAATCATTGGGTCCCTGGTTCG 48943 Query 19556 ATCCCAGGTGGAGGAG 19571 | |||||| | |||| Sbjct 48944 AGTCCAGGTCGTGGAG 48959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605561170385800