Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023724.1 Length=62991 Score E Sequences producing significant alignments: (Bits) Value seq5362 120 1e-22 seq582 114 5e-21 seq3838 86.0 3e-12 >seq5362 Length=3136 Score = 120 bits (132), Expect = 1e-22 Identities = 345/524 (66%), Gaps = 19/524 (4%) Strand=Plus/Minus Query 52347 CAACTCGGCACACTCGGCGGCGGCAACCATTTCATCGAACTGTGCGTCGACCACCGCGGC 52406 || ||||| || || ||| || ||||| |||||||| || |||| | ||| | Sbjct 562 CAGCTCGGAACGCTGGGCTCTGGTAACCACTTCATCGAGGTGACACTCGATGAAAGCGAC 503 Query 52407 TGCGTGTGGCTGTTCCTGCACTCCGGTTCACGTGGCGTCGGCAACAAGATCGCCCAGAAG 52466 |||| ||||||||||||||||| || || || |||| |||||| |||| ||| | Sbjct 502 GGCGTCTGGCTGTTCCTGCACTCGGGAAGCCGCGGTATCGGAAACAAGCTCGCGCAGCAT 443 Query 52467 CACATCAAGATCGCGCAAGCCGAATGCGACCTGTACGGCATCGAACTGCCCGGCGGCAAC 52526 |||||||||||||| | | | ||||| | || |||| | || |||| | Sbjct 442 CACATCAAGATCGCCAAGGACTTGTGCGAGCGGTGGTACATCAACCTTCCCG------AT 389 Query 52527 AAGGATCTGGCGTACCTCGTCGAAGGTGA-ACCGTCGTTTGACGCGTACCTGAATGAGCT 52585 |||||| || ||||| |||| || || ||| || ||| ||||| | | || || Sbjct 388 CCGGATCTTGCCTACCTGGTCG-AGAAGACACCCGAATTCGACTCGTACATCACCGATCT 330 Query 52586 GCGTTGGGCGCAACAGTTCGCACTGTTCAACCGCGACGAAATGATGGACCGGTACCGGCA 52645 ||||| || || ||||| || |||||||||| || ||||||||||| | | | Sbjct 329 CAACTGGGCTCAGCACTTCGCTTTGCTCAACCGCGAAGAGATGATGGACCGCGTCGTGAA 270 Query 52646 GGCGTTCGCACGCTGGATGGGCATCGGTGTCGATGAGGCGCCGGTCGTCGAAATCGCCGG 52705 || ||||| | || ||| || | || || | || || |||| || | Sbjct 269 GGACTTCGC-----GCAT-TTCATGGGAGACGGCAAGCCCGCGATCATCGA---CGAAGT 219 Query 52706 CGAACGTGTCAACGCGCACCACAACTACACGGTGCAGGAATGCGTCGACGGTGAGCTG-G 52764 ||| || ||||| |||||||||| ||| | |||| | | | | || || | | Sbjct 218 CGAGCGGATCAACTGCCACCACAACTTCACCCAGAAGGAGTTCCAC-ATGGGCAGGGGTG 160 Query 52765 TGTGGGTGACCCGCAAGGGTGCCATCAGCGCGAAGCTCGGCGAGCGTGGCCTGATCCCGG 52824 ||||| ||| ||| |||||||| |||| || || ||| || || || ||||| | Sbjct 159 TGTGGCTGAGCCGTAAGGGTGCGATCAAGGCAAACGAGGGCACGCCCGGGCTCATCCCCG 100 Query 52825 GAAGCATGGGCACCGCATCCTATGTCGTCACCGGCAAGGGCAAC 52868 | ||||| || || || |||||| ||| ||||| ||| Sbjct 99 GTTCGATGGGGACGGCGAGTTACGTCGTCGTCGGGAAGGGAAAC 56 >seq582 Length=79996 Score = 114 bits (126), Expect = 5e-21 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 51999 CTGCCGTTCGTGCATCCGCACGTTGCCCTCATGCCCGACGCGCACGTCGGCAAAGGTTCG 52058 ||||| |||| |||||||||| | ||||||||||| ||| | ||||| || | Sbjct 74546 CTGCCCATCGTTTATCCGCACGTGGTGGCCATGCCCGACGTGCATGCCGGCATCGGCGCC 74605 Query 52059 TCTGTTGGTACCGTCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCGAC 52118 | || || | ||| || ||||| |||||||| |||||||| ||||| || || |||||| Sbjct 74606 ACCGTCGGCAGCGTGATTCCCACGCGCGGCGCCGTCATCCCGGCCGCCGTGGGCGTCGAC 74665 Query 52119 ATCGGCTGCGGCATGATCGCC 52139 |||||||||||||||| |||| Sbjct 74666 ATCGGCTGCGGCATGAACGCC 74686 >seq3838 Length=2938 Score = 86.0 bits (94), Expect = 3e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 595 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 651 |||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1711 TAGCTCAACTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201412015932360