Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq6367 136 3e-27 seq249 118 7e-22 seq9164 86.0 4e-12 seq3682 82.4 5e-11 >seq6367 Length=825 Score = 136 bits (150), Expect = 3e-27 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 94897 AGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAG 94955 ||||| |||||||| | |||||| ||||||||||| ||| ||||||||||| | ||| | Sbjct 433 AGGTGCGGGATACCTTCGTACGGCGTGAGCTCGAC-CATCTTGGGGTCGATGAGGATCAT 375 Query 94956 TTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCT 95015 || || || || || ||| ||||| ||| || ||||| ||||| | |||||| Sbjct 374 CCGTACTTCTTCCGGCGTTGCTCGGGTGAGCAACGAGACGAGCATCGAGTTCACGAAGCT 315 Query 95016 GGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAG 95075 |||| ||||| ||||||| ||| |||||||| || || |||||||| || |||||| Sbjct 314 CGACTAACCCGAGCCGGTCGAGCCTGCCACCAGAAGGTGGGGCATCTTCGCGAGGTTCGC 255 Query 95076 GGAGACGTCCTTACCCTCGACGTCCTTGCCCA 95107 |||| | ||| |||| |||||| |||| Sbjct 254 ACTGACGAAGTCACCTTCGATGTCCTTACCCA 223 >seq249 Length=98374 Score = 118 bits (130), Expect = 7e-22 Identities = 234/338 (69%), Gaps = 19/338 (6%) Strand=Plus/Minus Query 94435 TCGGAGACGAACGCGCCCTGTATCCGGAT-GGCG--CTGCGCGCCCCCACCGGCAGGAAT 94491 ||||||||||||||||| || | ||||| ||| ||| | ||| ||||| | | Sbjct 86401 TCGGAGACGAACGCGCCGTGAACACGGATCGGCAAACTG---GTGCCCGGCGGCATGTAG 86345 Query 94492 AACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 94551 | | |||||| |||| || |||||||| ||||||| ||| | ||| |||| | Sbjct 86344 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAA 86285 Query 94552 TCGGTGAGG---GACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGG 94608 ||| | | ||| | ||| |||| || || | || | |||| |||||| ||| Sbjct 86284 TCGATCTTGCTCGACACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGG 86228 Query 94609 CCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCA 94668 || || | ||| ||||| || || ||||| ||||| |||| | || || ||||| || Sbjct 86227 CCGGTGATCACGTCCACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCC 86168 Query 94669 CGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCA 94726 ||||||||||| ||||| ||| | || ||| | || ||| |||||| | | || Sbjct 86167 CGCGCCTTCTGGGCGATACGGGCGATCAGTT--CTTCGACC---TTCTTGCCGACGATCA 86113 Query 94727 TCATGAGGTCCGCGAGTTCATCCACCACTACCACGATG 94764 |||| | ||| || | ||| || ||||| ||||||||| Sbjct 86112 TCATCATGTCGGCAAATTCGTCGACCACCACCACGATG 86075 >seq9164 Length=436 Score = 86.0 bits (94), Expect = 4e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 94936 TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACC 94995 || || ||||||||||| || | | | || |||||| ||||| |||||||| | Sbjct 376 TTCGGATCGATCATGATCAGGCGGCACTGTTCCGGGGTCATGCGGTAAAGCAGCGACAGG 317 Query 94996 AGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGC 95055 | ||| | ||||||| ||| || ||||| ||||| | || || |||||||||||| Sbjct 316 ATCATGGTGTTGATGGCAACGGATTTACCCGAGCCGGTGGTACCTGCAACCAGCAGATGC 257 Query 95056 GGCATCTTGGCCAGGTTCAGGGA-GACGTCCTTACCCTCGACGTCCTTGCCCACTGCCA 95113 |||||||| |||| | || | || ||| ||| || | || | |||||||| |||| Sbjct 256 GGCATCTTCGCCA-GATCGGCGATGACCGCCTCGCCATTGATGGTCTTGCCCAGCGCCA 199 >seq3682 Length=2225 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 94425 GATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACCGG 94484 ||| ||| | |||| || |||||||||||| || ||| | | | | ||| |||| || Sbjct 2098 GATTTCCTCGTCGGTGATGAACGCGCCCTGCATACGGGTCGGCTTACCCGCGCCCATGGG 2157 Query 94485 CAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCAC 94544 |||||| | ||||||||||| || ||||||| |||||| ||| || || ||||| || Sbjct 2158 CAGGAACAGGCCGTCACCCATACCGATGAGCTTCTCGGCGCCGGGCTGATCGAGGATGAC 2217 Query 94545 CCG 94547 || Sbjct 2218 TCG 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340063546025840