Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq582 194 7e-45 seq5362 87.8 7e-13 >seq582 Length=79996 Score = 194 bits (214), Expect = 7e-45 Identities = 770/1178 (65%), Gaps = 53/1178 (4%) Strand=Plus/Plus Query 49344 CGAAATCGACGCGCTCACACTGGACCAGGCCAAGCAGACCGCCGGCCTGCCGTTCGTCCA 49403 ||| |||||||||| | ||| |||| | || | |||| ||||||| |||| | Sbjct 74500 CGATATCGACGCGCAGGCGCTGCGCCAGCTGCACCATATCGCCAGCCTGCCCATCGTTTA 74559 Query 49404 CCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAAGGGTTCATCGGTCGGCACCGT 49463 ||||| |||| | |||||||||| ||| ||||||| || | | ||||||| ||| Sbjct 74560 TCCGCACGTGGTGGCCATGCCCGACGTGCATGCCGGCATCGGCGCCACCGTCGGCAGCGT 74619 Query 49464 CATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGAT 49523 || || || || |||||| ||||||||||| |||||||| |||||||||||||| || Sbjct 74620 GATTCCCACGCGCGGCGCCGTCATCCCGGCCGCCGTGGGCGTCGACATCGGCTGCGGCAT 74679 Query 49524 GATCGCCGCCCGCACCATCTACACCGAGGACGACCTGGACGGCCGGGACCTCGC-CGCGC 49582 || ||||| ||||| | || || | | ||| ||| | | |||| || ||| | Sbjct 74680 GAACGCCGTGCGCACGACCTTGACGGCCGGCGAGCTGCCTGAC---AACCTGGCGCGC-C 74735 Query 49583 TGCGGCACGCCATCGAGGGCGCGA-TCCCGCTGTCGCCGGGCA-----ACTACAACCGCG 49636 |||| ||||||||| | | || ||||| | | || ||| ||| | ||||| Sbjct 74736 TGCGCAGCGCCATCGAAGCGGAGATTCCCGTCGGCTTCGAGCAGCACGACTGGAGCCGCG 74795 Query 49637 -ACACCGATCGTTTC--CCGTGCACCGC-CGG--CCGTATCGCCACCCTGACCGACCTCG 49690 || | ||| | || || |||| ||| || | || |||| | || ||| Sbjct 74796 TGCAGGGTTCGCGCCATGCGCGCGCCGCGCGGCCCCTTGCCGGGCGCCTGGCGCACATCG 74855 Query 49691 CCGGCCGCGGCACGGACGGCAT--CCCAGCGGTTG-ACCTG-TCGCACTCACCGAAGTGG 49746 || ||| ||| | |||||| || || | || || | ||| | ||| |||| Sbjct 74856 TCG--AGCGCCACCG-CGGCATCGCCAAGATGCTGCGCCAGTTCGAGCGCAC----GTGG 74908 Query 49747 CGGGAACAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGACGA- 49805 ||| ||| | | | || ||||| || || ||||| ||| | ||||| ||||| Sbjct 74909 ATCTGCCAGGCCGGCACCTTGGGGGGCGGCAATCACTTCATTGAAATCTGCCTCGACGAG 74968 Query 49806 AACCGGCCGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGC 49865 | | | || |||||| | | ||||| || || ||||| ||| |||||||| |||| Sbjct 74969 GAGCAG-CGCGTGTGGGTCATGCTGCATTCGGGCTCGCGCGGCATCGGCAACGCCATCGG 75027 Query 49866 CCAAAAGCACATCAAGGTCGCGCAGAAACTCATGGACCGCTGGTGGATTCAGCTCCCAAG 49925 | | |||| | ||||||||| |||| ||| | | ||||| || Sbjct 75028 TCGTTACTTCATCGCCGCCGCGCAGAAGGACATGCGGCGCCACCAGCTGCAGCTGCCGGA 75087 Query 49926 CCCCGACCTGGCGTACTTGCCGCAAGGCACACCGGAGTTCGCCGACTATCTGCGGGAGCT 49985 | | ||||||||||| || ||||| | ||| ||||| |||||| || || | | Sbjct 75088 CGCGGACCTGGCGTATCTGAGCGAAGGCTCCGCGGTGTTCGACGACTACGTGGAGGCGGT 75147 Query 49986 GCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATGATGGACCGTTTCGCT-A 50044 | ||||||||||| | |||||| ||||||| ||| |||||| ||| | ||| Sbjct 75148 GGACTGGGCGCAGGATTACGCGCTGCTCAACCGCGGCGAGATGATGCGCCGCGT-GCTCG 75206 Query 50045 TCGTGTTCGGCGAGTGGATCGGGCACCCCACCGGCGGGGCGCTGGTGGAAACCACGGTGA 50104 |||| | ||||| | ||| || || | ||| || || |||| ||| | | Sbjct 75207 ACGTGCT-GGCGA--AGTTCGCGCCGCCGTTC--CGGCTCGACGG-GGAAGCCA---TCA 75257 Query 50105 ACACGCACCACAACTACACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGGCTGACCC 50164 || ||||||||||||| ||| ||| ||||||| | || | | |||| | Sbjct 75258 ACTGCCACCACAACTACATCGCGCGCGAAACGCACGGCAACGATGATTTATATGTGACGC 75317 Query 50165 GCAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGCATGGGCA 50224 |||||||||||||| |||| || | | ||||| | ||||| |||||||||||| Sbjct 75318 GCAAGGGCGCCATCTCGGCGCGGCAGGGGGAGCTGGGCATCATCCCCGGCAGCATGGGCG 75377 Query 50225 CCCCGTCATACGTGGTGCGCGGCAAGGGCAACCCGGCCGGGCTGTGCTCGGCGCCGCACG 50284 | | | | | ||||| ||||||||||| |||| | | ||||| |||||| Sbjct 75378 CGCGCAGCTTCATCGTGCGTGGCAAGGGCAAGCCGGAATCGTTCTGCTCCTGCTCGCACG 75437 Query 50285 GCGCCGGCCGCCGGCAT-TCCCGCACCCAAGCCCGGAAG---CTGTTCACCGAGGCCGAC 50340 | || || || | |||| ||||| | | || |||| | |||| | ||| Sbjct 75438 GGGCGGGGCG-CAGCATGAGCCGCAGCGAGGC---GAAGCGCCGCTTCAACCGCTTCGAA 75493 Query 50341 CTCGCCGACCGGATGCAGGGTATCGAGTACCGGCACGG--GGACGCGTGGGTTGACGAAA 50398 || ||||| | || | || ||||||| || ||| || || |||| | | ||||||| Sbjct 75494 CTGGCCGAGCAGACGGCCGGCATCGAGTGCC-GCAAGGATGGCGGCGT-GATCGACGAAA 75551 Query 50399 TCCCGGACGCCTACAAGCCAATTCAGACCGTGATGGCCGACGCCGCCGACCTCGTGGAGG 50458 |||| | |||||| || || | | || ||||| || | |||||| ||||| | Sbjct 75552 TCCCTGCCGCCTATAAAAACATCGACGCGGTCATGGCGCACCAGGGCGACCTGGTGGAAG 75611 Query 50459 TTGTGCACGAGCTGCGGCAGATTCTCAACGTCAAGGGC 50496 | ||||| |||| ||| | || | |||||||| Sbjct 75612 TGGTGCATACCTTGCGCCAGGTCGTCTGCATCAAGGGC 75649 >seq5362 Length=3136 Score = 87.8 bits (96), Expect = 7e-13 Identities = 194/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 49753 CAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGACGAAACCGGC 49812 |||||||||| || ||| |||||||| |||||||| | || || |||| || | Sbjct 562 CAGCTCGGAACGCTGGGCTCTGGTAACCACTTCATCGAGGTGACACTCGATGAAAGCGAC 503 Query 49813 CGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAG 49872 | || ||||||||||||||||| || || || |||| |||||| |||| || | Sbjct 502 GGCGTCTGGCTGTTCCTGCACTCGGGAAGCCGCGGTATCGGAAACAAGCTCGCGCAGCAT 443 Query 49873 CACATCAAGGTCGCGCAGAAACTCATG-GACCGCTGGTGGATTCAGCTCCCAAGCCCCGA 49931 ||||||||| |||| || ||| || || || |||| || | || || || || Sbjct 442 CACATCAAGATCGC-CAAGGACTTGTGCGAGCGGTGGTACATCAACCTTCCCGATCCGGA 384 Query 49932 CCTGGCGTA-CTTGCCGCAAGGCACACCGGAGTTCGCCGACTATCTGCGGGAGCTGCACT 49990 || || || || | || | | ||||| || |||| | || | || || ||| Sbjct 383 TCTTGCCTACCTGGTCGAGAAG-ACACCCGAATTCGACTCGTACATCACCGATCTCAACT 325 Query 49991 GGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATGATGGACCG 50036 |||| |||| ||||| | ||||||| || ||||||||||| Sbjct 324 GGGCTCAGCACTTCGCTTTGCTCAACCGCGAAGAGATGATGGACCG 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193727775895500