Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023747.1 Length=59672 Score E Sequences producing significant alignments: (Bits) Value seq5362 170 7e-38 seq582 116 1e-21 >seq5362 Length=3136 Score = 170 bits (188), Expect = 7e-38 Identities = 328/478 (69%), Gaps = 7/478 (1%) Strand=Plus/Minus Query 54353 CAGCTCGGCACGCTGGGCGGTGGTAATCACTTCATCGAGCTGTGCCTGGACCACCTCGAC 54412 |||||||| ||||||||| |||||| |||||||||||| || || || | |||| Sbjct 562 CAGCTCGGAACGCTGGGCTCTGGTAACCACTTCATCGAGGTGACACTCGATGAAAGCGAC 503 Query 54413 CGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGATCGCGCAGAAG 54472 | || ||| ||||||||||||| || || ||| |||| |||||| |||||||| | Sbjct 502 GGCGTCTGGCTGTTCCTGCACTCGGGAAGCCGCGGTATCGGAAACAAGCTCGCGCAGCAT 443 Query 54473 CACATTCAGGCCGCGCAGGGCTATTGCCAGGCGAACGGGCTGCA-CGTGCCGCACAAGGA 54531 ||||| || ||| ||| || ||| || || | | || | | || | ||| Sbjct 442 CACATCAAGATCGCCAAGGACTTGTGCGAG-CGGTGGTACATCAACCTTCCCGATCCGGA 384 Query 54532 TCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTGAATTGCGTTG 54591 ||| || ||||| |||||| || ||| |||||| ||| || || | || Sbjct 383 TCTTGCCTACCTGGTCGAGAAGACACCCGAATTCGACTCGTACATCACCGATCTCAACTG 324 Query 54592 GGCGCAGCGGTTTGCGTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCGTT 54651 ||| |||| || || | |||||||| || ||||||||||| ||| | ||| || Sbjct 323 GGCTCAGCACTTCGCTTTGCTCAACCGCGAAGAGATGATGGACCGCGTCGTGAAGGACTT 264 Query 54652 CAGGCATTGGGTCGGGGCCGACCAGGGCGCCGAGC-TGGTCG---TCGAGACCATCAACG 54707 | ||||| | || | || | || ||| || | | | || ||||| |||||| Sbjct 263 CGCGCATTTCATGGGAGACGGCAAGCCCGC-GATCATCGACGAAGTCGAGCGGATCAACT 205 Query 54708 CGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGTGGCTGACCCGTA 54767 |||||||||| ||| ||||||||| ||| | | | | |||||||||| ||||| Sbjct 204 GCCACCACAACTTCACCCAGAAGGAGTTCCACATGGGCAGGGGTGTGTGGCTGAGCCGTA 145 Query 54768 AGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCAC 54825 ||||||||||| | || |||||||| || || || || || || |||||||| || Sbjct 144 AGGGTGCGATCAAGGCAAACGAGGGCACGCCCGGGCTCATCCCCGGTTCGATGGGGAC 87 >seq582 Length=79996 Score = 116 bits (128), Expect = 1e-21 Identities = 149/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 53964 TCGACGACCAGACTCTCGCGCAGGC-GCAGCAGATCGCCGATCTGCCTTTCGTTTATCCG 54022 |||||| ||| | || |||| || ||| || |||||| ||||| ||||||||||| Sbjct 74505 TCGACGCGCAGGCGCT-GCGCCAGCTGCACCATATCGCCAGCCTGCCCATCGTTTATCCG 74563 Query 54023 CATGTGGCGCTGATGCCCGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATC 54082 || |||| | |||||||| | |||| ||| | ||| || ||||||| ||||| Sbjct 74564 CACGTGGTGGCCATGCCCGACGTGCATGCCGGCATCGGCGCCACCGTCGGCAGCGTGATT 74623 Query 54083 CCAACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGTTGCGGCATGATC 54142 || || ||||| || |||||||| ||||| |||||||| || || |||||||||| | Sbjct 74624 CCCACGCGCGGCGCCGTCATCCCGGCCGCCGTGGGCGTCGACATCGGCTGCGGCATGAAC 74683 Query 54143 GCGGCCCGCACCACGTACACGGC 54165 || | ||||| || | ||||| Sbjct 74684 GCCGTGCGCACGACCTTGACGGC 74706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190797063381540