Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq5362 129 2e-25 seq3838 87.8 7e-13 seq582 87.8 7e-13 >seq5362 Length=3136 Score = 129 bits (142), Expect = 2e-25 Identities = 352/529 (67%), Gaps = 29/529 (5%) Strand=Plus/Minus Query 53826 CAACTCGGCACACTCGGCGGCGGCAACCACTTCATCGAACTGTGCGTCGACCAGCACGGC 53885 || ||||| || || ||| || |||||||||||||| || |||| | || | Sbjct 562 CAGCTCGGAACGCTGGGCTCTGGTAACCACTTCATCGAGGTGACACTCGATGAAAGCGAC 503 Query 53886 CGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGATCGCCCAGAAG 53945 | | |||||||||||||| || || |||||| |||| |||||| |||| ||| | Sbjct 502 GGCGTCTGGCTGTTCCTGCACTCGGGAAGCCGCGGTATCGGAAACAAGCTCGCGCAGCAT 443 Query 53946 CACATCAAGATCGCGCAAGCCGAATGCGCCGAGCA-TGGTG--TCGAACTGCCCGGCGGC 54002 |||||||||||||| |||| || | ||||| |||| || | || |||| Sbjct 442 CACATCAAGATCGC-CAAG--GACTTGTGCGAGCGGTGGTACATCAACCTTCCCG----- 391 Query 54003 AACAAGGATCTAGCCTACCTCGTCGAGGGCGAACCGTCGTTCGGCGCGTACCTCGCTGAG 54062 | |||||| |||||||| |||||| ||| |||| | ||||| || | || Sbjct 390 -ATCCGGATCTTGCCTACCTGGTCGAGAAGACACCCGAATTCGACTCGTACATCACCGAT 332 Query 54063 CTGCGTTGGGCGCAACAGTTCGCGATGTTCAACCGCAACGAGATGATGGACCGGTACCGG 54122 || ||||| || || ||||| || |||||||| | |||||||||||||| | | Sbjct 331 CTCAACTGGGCTCAGCACTTCGCTTTGCTCAACCGCGAAGAGATGATGGACCGCGTCGTG 272 Query 54123 CAAGCGTTCGCGCACTGGCTCGACATCGGTGTCGACGAGGCGCCAGTCGTCGAGATCGCC 54182 | | |||||||| | ||| || | || | || | | || |||| || Sbjct 271 AAGGACTTCGCGCATT------TCATGGGAGACGGCAAGCCCGCGATCATCGA---CGAA 221 Query 54183 GGCGAACGCGTCAACGCGCACCACAACTACACCACCCAGGAGCACATCAAC--GGTGAGC 54240 | ||| || ||||| |||||||||| ||||||| || | || || || || Sbjct 220 GTCGAGCGGATCAACTGCCACCACAACT---TCACCCAGAAGGAGTTCCACATGGGCAGG 164 Query 54241 TG-GTGTGGGTGACCCGCAAGGGCGCCATCAGCGCGCAACTCGGTGA-GCGTGGCCTCAT 54298 | |||||| ||| ||| ||||| || |||| || ||| || | || || ||||| Sbjct 163 GGTGTGTGGCTGAGCCGTAAGGGTGCGATCAAGGC-AAACGAGGGCACGCCCGGGCTCAT 105 Query 54299 CCCCGGCAGCATGGGCACGGCCTCCTACGTCGTCACCGGTAAAGGCAAC 54347 |||||| ||||| ||||| ||||||||| ||| || || ||| Sbjct 104 CCCCGGTTCGATGGGGACGGCGAGTTACGTCGTCGTCGGGAAGGGAAAC 56 >seq3838 Length=2938 Score = 87.8 bits (96), Expect = 7e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 828 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 885 ||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1710 GTAGCTCAACTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 1767 >seq582 Length=79996 Score = 87.8 bits (96), Expect = 7e-13 Identities = 453/707 (64%), Gaps = 53/707 (7%) Strand=Plus/Plus Query 53831 CGGCACACTCGGCGGCGGCAACCACTTCATCGAACTGTGCGTCGACCAGCACGGCCGGCT 53890 |||||| | || |||||||| |||||||| ||| | ||| ||||| || | || | Sbjct 74920 CGGCACCTTGGGGGGCGGCAATCACTTCATTGAAATCTGCCTCGACGAGGAGCAGCGCGT 74979 Query 53891 GTGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGATCGCCCAGAAGCACAT 53950 |||| | | |||||||| || || ||||| |||||||| |||| | | ||| Sbjct 74980 GTGGGTCATGCTGCATTCGGGCTCGCGCGGCATCGGCAACGCCATCGGTCGTTACTTCAT 75039 Query 53951 CAAGATCGCGCAAGCCGA-ATGCGCCGAGCATGGTGTCGAACTGC--CCGGCGGCAACAA 54007 | |||||| || ||||| || || | | |||| | | ||| || Sbjct 75040 CGCCGCCGCGCAGAAGGACATGCGGCGC-CA------CCAGCTGCAGCTGCCGG--ACGC 75090 Query 54008 GGATCTAGCCTACCTCGTCGAGGGCGAACCGTCGTTCGGCGCGTACCTCGCTGAGCTGCG 54067 ||| || || || || ||| ||| || ||||| || ||| | | | | || Sbjct 75091 GGACCTGGCGTATCTGAGCGAAGGCTCCGCGGTGTTCGACGACTACGTGGAGGCGGTGGA 75150 Query 54068 TTGGGCGCAACAGTTCGCGATGTTCAACCGCAACGAGATGATGGACCGGTACCGGCAAGC 54127 |||||||| | | |||| || |||||||| |||||||||| ||| | Sbjct 75151 CTGGGCGCAGGATTACGCGCTGCTCAACCGCGGCGAGATGATGCGCCG-----------C 75199 Query 54128 GTTCGCGCACTGGCTCGACATCGGTGTCGACGAG-GCGCCAGTCGT-CGAGATCGCCGGC 54185 || ||||||| | | || ||| | ||||| | ||| | | ||| ||| Sbjct 75200 GT----------GCTCGACGT-GCTGGCGAAGTTCGCGCC-GCCGTTCCGGCTCGACGGG 75247 Query 54186 GAACGCGTCAACGCGCACCACAACTACACCACCCAGGA---GCACATCAACGGTGAGCTG 54242 ||| | ||||| ||||||||||||| | | | || |||| ||||| ||| | Sbjct 75248 GAAGCCATCAACTGCCACCACAACTACATCGCGCGCGAAACGCACGGCAACGATGATTTA 75307 Query 54243 GTGTGGGTGACCCGCAAGGGCGCCATCAGCGCGCAACTCGGTGAGCGTGGCCTCATCCCC 54302 | ||||| ||||||||||||||| |||| | || |||| ||| |||||||| Sbjct 75308 ---TATGTGACGCGCAAGGGCGCCATCTCGGCGCGGCAGGGGGAGCTGGGCATCATCCCC 75364 Query 54303 GGCAGCATGGGCACGGCCTCCTACGTCGTCACCGGTAAAGGCAACCCCGAA--GGGCTGC 54360 |||||||||||| || | || | |||| || || ||||| || ||| | |||| Sbjct 75365 GGCAGCATGGGCGCGCGCAGCTTCATCGTGCGTGGCAAGGGCAAGCCGGAATCGTTCTGC 75424 Query 54361 ATTCCGCGCCGCACGGCGCCGGCCGCCGCTACTCCCGCACCAAGGC-ACGCAAGCTG-TT 54418 ||| ||||||| || || ||| || ||||| | |||| | || || | || Sbjct 75425 --TCCTGCTCGCACGGGGCGGGGCGCAGCATGAGCCGCAGCGAGGCGAAGC--GCCGCTT 75480 Query 54419 CACCGTCGACGACCTCGCAGACCGTATGCGCGGCATCGAATACCGGCACGGT-GAGGCGT 54477 || | | ||| || || || | | | ||||||||| | ||| | | | | ||||| Sbjct 75481 CAACCGCTTCGAACTGGCCGAGCAGACGGCCGGCATCGAGTGCCGCAAGGATGGCGGCGT 75540 Query 54478 GGGTCGACGAGATTCCCGACGCCTACAAGCCGATTGACGTTGTCATG 54524 | ||||||| || || | |||||| || || |||| |||||| Sbjct 75541 -GATCGACGAAATCCCTGCCGCCTATAAAAACATCGACGCGGTCATG 75586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200356196176710