Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq833 131 4e-26 seq1320 89.7 1e-13 >seq833 Length=8904 Score = 131 bits (144), Expect = 4e-26 Identities = 178/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 38206 GGTGTAAACAAGGTGATCTTAATTGGTCACCT-TGGTCAAGATCCAGAGGTGCGCTATCT 38264 || ||||| || |||||||| |||| ||||| ||||||||||||||| ||||| | Sbjct 8248 GGCGTAAATAAAGTGATCTTGGTTGG-CACCTGTGGTCAAGATCCAGAAACTCGCTACTT 8306 Query 38265 ACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTTTGGCGGGATAA 38324 ||| | ||| ||||| | || ||| | ||||| |||| ||| || || Sbjct 8307 ACCGAACGGTAATGCAGTAACCAATCTCAGCCTTGCAACAAGTGAGCAGTGGACTGACAA 8366 Query 38325 GCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTGTTTGGGAAGCT 38384 |||||| |||||| | || || || || |||||||| ||| ||||||||||||| | Sbjct 8367 GCAAACGGGACAGAAAGTCGAAAAGACCGAATGGCACCGTGTTTCTTTGTTTGGGAAAGT 8426 Query 38385 GGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATTGAAGGCCAGCT 38444 |||||| | ||||| || || || || |||||||| || || || || ||||| |||| Sbjct 8427 CGCTGAAATCGCTGGTGAGTATCTGCGGAAAGGATCGCAGGTATACATCGAAGGTAAGCT 8486 Query 38445 TGAAAC 38450 | |||| Sbjct 8487 TCAAAC 8492 >seq1320 Length=7270 Score = 89.7 bits (98), Expect = 1e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 38212 AACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAGGTGCGCTATCTACCAAGC 38271 |||||||| || | | || | ||| || ||||||| || || || || | || | | Sbjct 5991 AACAAGGTCATTCTCGTAGGACGCCTGGGAAAAGATCCGGAAGTCCGTTACATCCCCAAC 6050 Query 38272 GGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTTTGGCGGGATAAGCAAACC 38331 || ||||||||||||||| | | || ||||| || ||||| || || || || Sbjct 6051 GGGGGCGCAGTGGCAAACCTGCAGGTCGCCACGTCGGAAACCTGGCGTGACAAACAGACA 6110 Query 38332 GGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTGTTTGGGAAGCTGGCTGAA 38391 || || ||| | ||||| ||||| || || |||| || ||||| || ||| Sbjct 6111 GGGGAGATGCGGGAGCAGACAGAATGGCATCGCGTGGTGCTGTTCGGCAAGCTCGCGGAA 6170 Query 38392 GTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATTGAAGGCCAGCTT 38445 || ||||||||||| || || || || | || || || || ||||| |||||| Sbjct 6171 GTGGCTGGCGAATATCTGCGCAAGGGCGCGCAGGTCTACATCGAAGGTCAGCTT 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132877097617110