Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq48 120 3e-22 seq420 105 6e-18 seq1623 82.4 7e-11 >seq48 Length=44992 Score = 120 bits (132), Expect = 3e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| || || || ||||| ||| || ||| ||| | |||||||| Sbjct 22609 AAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTGCGACCA-TCCTCGAG 22551 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | ||||| | || || ||||| ||||| ||||||||||| ||| Sbjct 22550 CTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGAT 22491 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | ||| || || | ||||| || ||||| Sbjct 22490 CTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACTTCCAAGGTGATAGTCTTGCC 22431 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| || ||||||||||||||| Sbjct 22430 AGTGAGAGTCTTGACGAAAATCTGCATG 22403 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || ||||| ||||| ||| | ||| | | | |||||||| |||||||| Sbjct 22144 GTAGACTCCTTTTGTATGTTGTAGTCGGATAGAGTGCGGCCA-TCCTCGAGTTGCTTGCC 22086 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| || || || ||||| ||||| ||||||||||| |||||| ||| Sbjct 22085 AGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTT 22026 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | ||| || || | |||| ||| ||||| |||| || Sbjct 22025 GACGTTGTCGATGGTATCAGATCCCTCGACCTCAAGTGTGATGGTCTTGCCAGTCAATGT 21966 Query 133643 TTTTACGAAAATCTGCATG 133661 ||||||||||| |||||| Sbjct 21965 CTTTACGAAAATTTGCATG 21947 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| ||||||| || || || ||||| ||||| ||||||||| Sbjct 22786 TCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTG 22727 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | || | || || | ||| || || | || | Sbjct 22726 TCTTGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAAGTAATA 22667 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| ||||||||||||||||| Sbjct 22666 GTCTTGCCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 >seq420 Length=40905 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || |||||||| ||||| ||||| || | ||| | | | ||||| || Sbjct 13340 AAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCA-TCCTCAAG 13398 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || | || || || ||||||||||| ||||| ||||||||||| ||| Sbjct 13399 TTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTGGAT 13458 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | ||| || || | ||| | ||| || || Sbjct 13459 CTTGGTCTTGACATTGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTAATGGTCTTTCC 13518 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || |||||||||||||| Sbjct 13519 AGTGAGAGTCTTGACGAAAATCTGCAT 13545 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||| ||| | ||| ||| | |||||||| |||||||| Sbjct 13805 GTGGACTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGACCA-TCCTCGAGTTGCTTGCC 13863 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| || || || ||||| ||||| ||||||||||| |||||| ||| Sbjct 13864 GGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTT 13923 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | || || || | |||| ||| || || |||| ||| Sbjct 13924 TACATTGTCGATGGTGTCTGATCCTTCGACCTCCAGTGTGATGGTCTTTCCAGTCAAAGT 13983 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 13984 CTTGACGAAAATCTGCAT 14001 >seq1623 Length=5066 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| || || || ||||| ||| | || ||| | ||||| || Sbjct 123 AAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCA-TCCTCAAG 181 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | || || || || || ||||| ||||| ||||||||||| ||| Sbjct 182 TTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGAT 241 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||| | || || | | ||| || || | ||||| ||| || || Sbjct 242 CTTGGTCTTTACGTTCTCGATGGTATCAGAGCCCTCAACCTCCAAGGTGATGGTCTTACC 301 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || || ||||| Sbjct 302 AGTCAGGGTTTTAACAAAGATTTGCAT 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483336171146200