Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq98 140 8e-28 >seq98 Length=772300 Score = 140 bits (154), Expect = 8e-28 Identities = 543/845 (64%), Gaps = 9/845 (1%) Strand=Plus/Minus Query 110301 GACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATC 110360 || |||||||| || ||||| |||||| | ||| | || | | || | || Sbjct 409499 GATTATTTTGGGTTTAAAACCCTTGAAAAATCCTATCTGCTGAAAATAGAAGGACAAATT 409440 Query 110361 ATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT 110420 | ||||| || ||||| ||||| | |||||||| | || ||||| | | |||||| Sbjct 409439 GTAGAACGCCCGCAACATTTGTTTATGCGTGTTGCCGTAGGGATTCACAAAGAAGATATT 409380 Query 110421 AAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCT 110480 || || |||| | ||| | | | ||| | || ||||| || || Sbjct 409379 GAAAGTGCGATTGCAACGTATAACCTGATGAGTGAGCGCTGGTTTACGCATGCAACCCCA 409320 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 || ||||||| |||| || | | ||| || |||| |||||| | || || Sbjct 409319 ACTTTATTTAATGCAGCTACCCCTAAACCTCAAATGTCTTCCTGCTTTTTACTGACCATG 409260 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 | || || ||||||||| ||||| ||| || | ||| |||| ||| ||||| || Sbjct 409259 CAGGACGACAGTATTGAAGGAATTTACGATACTTTAAAACAAACCGCTAAAATTTCACAA 409200 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | | | || || |||||| | | | ||| | || || | | ||| | |||| | Sbjct 409199 AGCGCAGGTGGTATTGGTTTAAGCATCCATAACATCCGTGCCACGGGATCTTATATTGGT 409140 Query 110661 ACAGCGAA-GGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGC 110719 | | || ||| | ||| ||| |||| || ||||| | ||| || ||||| || || Sbjct 409139 GGAACAAACGGGACCAGCAATGGGA-TTGTACCTATGTTGAAAGTATTTAACGATACCGC 409081 Query 110720 AAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACC 110776 |||||| | || ||||| ||| | || || | ||||| || || || || || Sbjct 409080 CCGTTATGTGGACCAGGGTGGAGGTAAACGTAAAGGTGCTTTTGCCATTTACCTGGAGCC 409021 Query 110777 TTGGCATTCAGATATATTTGAATTCT-TAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 |||||| ||||| | | || || | | || || |||||||| || || ||||||| Sbjct 409020 ATGGCATGCAGATGTGCT-GAGTTTTCTGGACCTGCGTAAAAACCATGGTAAAGAAGAAC 408962 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 | || | |||||||| ||||| | ||| | | || | ||||||| | | || Sbjct 408961 TTCGTGCCAGAGATTTATTCTATGCCCTTTGGGTATGTGACCTGTTCATGAGAAGGGTAG 408902 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 ||||||| || ||| | | | ||||||||| | || || || | ||| | Sbjct 408901 AAGAAAACGGAGACTGGAGTTTATTCTGTCCTCATGAAGCCCCGGGACTGGCAGATTGCT 408842 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC-GCAAA 111014 ||| ||| || || | | || || || ||||||||||| | || | | ||| Sbjct 408841 TTGGTGCAGAATTCGATGCTTTATATGAGCGTTACGAAAAAGAAGG-ACGTGCCCGTAAA 408783 Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074 ||| ||| ||||| |||||||| || || || ||||| ||||||| ||||| Sbjct 408782 ACCATTAAAGCACAAGAGCTTTGGTTTGCCATTCTGGATTCACAGATTGAAACCGGAACC 408723 Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 |||||| | |||||||||||| || ||||||| || || ||||||||||| Sbjct 408722 CCTTATCTGTTGTATAAAGATGCAGCAAACAGCAAATCCAACCAGCAAAATTTAGGAACC 408663 Query 111135 ATTAA 111139 || || Sbjct 408662 ATCAA 408658 Score = 111 bits (122), Expect = 4e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 112599 AACCTAAATAAAATTATTGA-CAAAACGACCTATCCAATTCAAAAAGCAAAACATTCTAA 112657 ||||| |||||||||||||| || || | ||||| | | |||| ||| |||| || Sbjct 408506 AACCTGAATAAAATTATTGATCATAATTAT-TATCCGGTAGAGGAAGCTAAAAATTCCAA 408448 Query 112658 TAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCTGATGTATTTATGATGAT 112717 | || |||||| |||| | || ||||| ||||| || |||| ||||| |||| Sbjct 408447 CATGCGCCACAGACCAGTTGGTTTAGGTGTACAGGGATTGGCAGATGCTTTTATCCTGAT 408388 Query 112718 GCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAAAAGATTTTCGAAACAAT 112777 ||| | || ||||| ||| | || ||| | |||||| || | ||||| ||||| || Sbjct 408387 GCGTTTACCATTTGAAAGTGAAGGGGCAAAAATTTTAAATAAAGAAATTTTTGAAACGAT 408328 Query 112778 CTATTTCGCTGCTATGACTGAATCTAATGAACTTGCTATTAAA 112820 ||||||||||| ||||| | || |||| || ||| ||||| Sbjct 408327 TTATTTCGCTGCCATGACGGCCTCACATGACCTGGCTGTTAAA 408285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186599839423805