Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_024782.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq523 248 2e-61 seq215 154 3e-33 >seq523 Length=83696 Score = 248 bits (274), Expect = 2e-61 Identities = 272/362 (75%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 1401 AAAGACGACCGCACCCTGGACATCTTCGATGTTCCGCAGCCGGCCCGCGCTATACCTGGT 1460 || || || || || | ||||||||| ||| || ||||| | | ||||| || || Sbjct 49897 AAGGATGATCGTACGTTAGACATCTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGG 49956 Query 1461 GAGTGCAACTACGCCGCCCAAATCAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGAC 1520 | ||||| | ||||| || |||| |||||| ||||||| |||||||| | || ||| Sbjct 49957 AATGGCAACAATGCCGCACAGGTCAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGAT 50016 Query 1521 CTTGACCGTTACGAGGTCGCCGCCCGCATGTCGCGCCTGTCCGGCGATGACGTGAGTAAG 1580 || ||||||||||| | | || |||||||| ||| |||| |||||||||||||||||| Sbjct 50017 CTGGACCGTTACGAAATTGGTGCACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAG 50076 Query 1581 AACATGCTCGACGCCTGGTCGAGCCCCGCCCGAACCGATCACAACCTGCCTTTCTACCGC 1640 ||||||| ||||| ||||||||||| |||||||| || || |||||||| ||||| | Sbjct 50077 CACATGCTTGACGCGTGGTCGAGCCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGA 50136 Query 1641 GCCGCCCTCCTGGAGGACGTCTGCGCGAGCCATCTGCTGACCAACTGGCTGGTCGGTGTG 1700 ||| | || || || || || || || || | | ||| |||||||||| | Sbjct 50137 GCCCCACTGCTTGAAGAAGTTTGTAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAA 50196 Query 1701 CGTGGCGGCCGCGTGGCTTACGGCCGCGATGCACTTCTCGCCGAGTTGGGCCGTCTTGAG 1760 ||||| ||||||||||||||||| ||||||||||| ||| ||| | || ||||| | | Sbjct 50197 CGTGGTGGCCGCGTGGCTTACGGTCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCG 50256 Query 1761 CG 1762 || Sbjct 50257 CG 50258 Score = 150 bits (166), Expect = 4e-32 Identities = 479/727 (66%), Gaps = 48/727 (7%) Strand=Plus/Plus Query 8801 CATTGAGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 8860 |||| ||||||| ||||||||| || ||| |||||||||||||||||| ||||||||| Sbjct 56889 CATTAAGCGAAATCGCCCCGGCGC-GCTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 56947 Query 8861 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCG 8918 ||||||||||||||||||||| ||||| ||| | |||| ||| | |||||||| Sbjct 56948 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 57005 Query 8919 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGATGCCCTGCGTC--GCGC--TGCGCTGGG 8974 | || || |||| || ||||| ||||||| | ||| | |||| || |||| Sbjct 57006 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA----CAGCGACAAGCGCCTGGCCATGGG 57061 Query 8975 CGGCCGCCGCTTCAACATGGACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTG 9034 | | || |||| ||||| || ||| || || | | || || | |||| | Sbjct 57062 TGCCAGCAAGCTCAAGATGGAAATCTACAGCGGCACCCAAAACGAGCTGGAACAGATCCG 57121 Query 9035 CGCGGCCGGTGGCTTCGCCGAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGC 9094 | | |||||| |||| ||| | | | | || |||| || | | || || || Sbjct 57122 CACCGCCGGTAAGTTCGACGAAACAGACCATGCACTCACGATGACCATTCATGGTGTCGC 57181 Query 9095 CGAAAT-TGCAGAGCGTGACGCGTCA-CGTTTTGCCGAGT--TGATCCAAAAGAGAAGCC 9150 | | | | || | ||| || || |||| || || |||| |||| ||| | Sbjct 57182 TGCGTTGTCCCGAAC-CGACCCGGCAGCGTT---CCAGGTACTGAT-CAAAGGAGGA--- 57233 Query 9151 ATCCAGGGAGGACCAAGCGATGAGCCTACGCGCCGTCAACCTCGCAAAAATCCACATCGC 9210 | ||| ||||| || | ||| || | | | || ||||||||||| Sbjct 57234 AGACAG---TGACCACACG--TAACCT----GCAATTGAGC-----AAGATCCACATCGC 57279 Query 9211 CAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCTCGCGTCGCGGG 9270 |||| | || || |||| || || ||||| || || ||| ||| ||||| ||||| Sbjct 57280 CAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTGGGCCGCGTGGCGGG 57339 Query 9271 CGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTGGTCGAACTCCA 9330 ||||| |||||||| ||| | ||| |||||||||| | ||||||| ||| | Sbjct 57340 TGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTACTGGCCGAGTTTGC 57399 Query 9331 GCGCCTGGGCTGG------AAACCGAAGAGCAACCGGCAGGGCCGGGCGACGCCAAAAGT 9384 ||| |||||||| ||||||| | || ||| ||||| | || | | Sbjct 57400 CCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGCAAGGGACCGATGGC 57456 Query 9385 GCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAGCGCCCATCG 9444 | ||| | ||||| || || || | ||||| || | || ||| ||| | || Sbjct 57457 GGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTCGCCGAGGCCAAACG 57516 Query 9445 CCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTCGAGCGGGTCGAGTG 9504 | ||||| || |||||| ||||||| |||||||||| |||||||||| || || || Sbjct 57517 CTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTCGAGCGAGTGGAATG 57576 Query 9505 GCTGGAC 9511 ||| ||| Sbjct 57577 GCTAGAC 57583 Score = 123 bits (136), Expect = 6e-24 Identities = 277/416 (67%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 177 ATCCAGCGGCTAGCCCATACAACCCTTCCGATGATTTCCAGGTCCGACAGCTTTGCCTTT 236 ||||| | || ||||||||| || | || || || |||||||| || ||| || | Sbjct 48650 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 48709 Query 237 GGGACGATCATTTCGGTATAGGCCTTGTTTTCACTGATGATCGACACCGACCCGTCGAAG 296 ||||| | ||| ||| ||||||||||| ||||||||||| | ||||||||||| Sbjct 48710 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 48769 Query 297 CGTCTTTGCAGGCGCTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGACTGCCGCG 356 | | || || | || |||||||||||||||||||| || | |||||| || ||| | Sbjct 48770 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTCT 48829 Query 357 TCTTGGACCGTTGACTTGGTGTGATCCACAAGCACTGTATCTCCATCGCACAGCAGAGGC 416 | | | || | |||| || | | ||| ||||| ||||||| || || | Sbjct 48830 CCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCCC 48889 Query 417 TCCATAGAGTCACCGCCAATGCGGATCGCTGAGATACTGGAGGGGTCCAAACCCTTTTTT 476 ||||| || || ||| | | ||||| || || | | | | ||||| || | || Sbjct 48890 TCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTTG 48949 Query 477 CGCAGGCTGTACCGAGTGAATGCAAGATTCACAAGCACGGTGGCGCCGTCGGTCCAGGAA 536 || || |||| ||||| ||||| | || || || || || ||| |||||| Sbjct 48950 CGAAGCGAGTACGCGGTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAGGCG 49009 Query 537 CCATGCCCTGCGCTCACCTGGCCGTCATAGAGGGGTATGTATACATACTCGCCCTC 592 || || || || || ||| |||| || | || | ||| | |||| | |||| Sbjct 49010 CCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCCTC 49065 Score = 95.1 bits (104), Expect = 3e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 6157 GCCTGGGGCGAGCGCCCGCCTGTCTTCGTCCAACTGCTGGCCGCTGAGGTGGCCCGCAGC 6216 || |||||| || | |||| | ||||| | ||||| ||||| || || || || | Sbjct 53731 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 53790 Query 6217 AGCCAGACGAAAGCCGGCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 6276 | | |||| || ||| || || |||||||||||||| || |||||||| | ||| Sbjct 53791 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 53850 Query 6277 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGTCGTGTCCTGGCCGCGCTG 6336 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 53851 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 53910 Query 6337 AGCCGCATTGAGTGCCCGGCCCTGGGCGAGGCGGTGACCTCGGTCGAGTG 6386 | |||||||| || ||||||| |||| | || ||| ||| | |||| Sbjct 53911 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTG 53960 Score = 87.8 bits (96), Expect = 4e-13 Identities = 263/399 (66%), Gaps = 14/399 (4%) Strand=Plus/Plus Query 4876 ATCCTGGGTGAAATGGGCATCAAGCCGGCCGGGACCATCCCGGAAATGGCCGACCAGATC 4935 ||||| | || ||| ||||| | |||||| |||||| ||| |||| |||||||||| Sbjct 52595 ATCCTTCGCGAGATGAGCATCCAACCGGCCCCGACCATGTCGGTGATGGTCGACCAGATC 52654 Query 4936 GCCGAGGAACTGGCCGCCAGCGGCCGCCCGCTGATCATCGACGAAATGGACCACCTGGTC 4995 || ||| | || || ||||| ||||||||| | |||||||| || | ||||| || Sbjct 52655 GCTGAGCAGTTGTCCAAGAGCGGGCGCCCGCTGTTGATCGACGACGTGCAATACCTGCTC 52714 Query 4996 ------GCCGCTGGCCAGGTCGAGCTGATTCGTGATCTGTACGAGTCCAGCCAAGCCTCC 5049 |||| | |||| || |||| || ||| ||| | ||||| ||| || Sbjct 52715 GAAAAAGCCG-TAGCCA--ACGTCCTGA-CCGACATC--TACAACGCCAGCGAAGGGACC 52768 Query 5050 ATCTTGCTGATCGGCGAGGAAATGCTGCCGACCAAGCTCAAGAAGTACGAACGCTTCCAT 5109 || | ||||||||||| ||| |||| | || |||| |||||| | ||| Sbjct 52769 ATTGTCCTGATCGGCGAAGAACGTGTGCCCGGTAGCCTGGCGAAGCTGGAACGCCTGCAT 52828 Query 5110 GGCCGCGTTCTCAGCTGGGTTCCGGCCCAGCCAGTGTCCCTGGAGGACGCCCGCAACCTG 5169 ||| || || ||||| || || |||| | ||||||| || ||| |||| Sbjct 52829 AACCGGGTGCTGGAGTGGGTACCTGCGCAGCGCGCCACCCTGGACGATCTGCGCGCCCTG 52888 Query 5170 GCGCCGGTCTACAGCCCCGGAGTGGC-TATCGCTGACGATTTGCTCGCGCACCTGGTGAA 5228 || | ||| | |||||| | || ||||||| |||||||| | ||||| || Sbjct 52889 GC-CGAGTCAAGCTACCCGGAATTGCACTTCGCTGATGATTTGCTGGATGACCTGCGCAA 52947 Query 5229 GAAGTCCCTGGGCTCTGTCCGTCGCGTCGCGGTGAACCT 5267 |||| |||| | ||||| || ||||| ||||| Sbjct 52948 GAAGGTGAATGGCTGCCTGCGTCGTGTAGCGGTCAACCT 52986 >seq215 Length=48791 Score = 154 bits (170), Expect = 3e-33 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 25580 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25639 ||||||||||||| |||||||||||||| || || |||||||||||||||||||||| Sbjct 24376 CGATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGG 24435 Query 25640 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 25698 | ||||| ||||| || ||||| || | ||| |||||| | || ||||| ||||| || Sbjct 24436 CAGACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCT 24494 Query 25699 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 25740 ||||||||| |||||| ||||| || || ||||| |||||| Sbjct 24495 TCGGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGAT 24536 Score = 147 bits (162), Expect = 5e-31 Identities = 470/720 (65%), Gaps = 18/720 (3%) Strand=Plus/Plus Query 26527 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 26586 ||| |||| |||||||||||||||| || || ||||||||||| | | ||| Sbjct 25257 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCGCTGGAGGCCGTCAAAGGCAAG 25316 Query 26587 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 26646 | ||||| || || |||||| ||||| |||||||||||||||| || || | Sbjct 25317 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 25376 Query 26647 AACATGGTCAAGGCGCAGAAGAAGGCCGACGCCGACCTGGAAGTCCT--CCAGCTCAACG 26704 ||||||||||||||||| |||||||| | | || || || | ||| | |||| Sbjct 25377 GGGATGGTCAAGGCGCAGAAAGAGGCCGACAACCAGCTTGAGGTGTTGGCCACC--AACG 25434 Query 26705 AACAGGGGCGCCTGAAGAAACAGACCCAGGCAGTCAAGGCCTACAGCGATGCGCTCCAGC 26764 | || |||||| || ||| | | || ||| ||||| | || || | Sbjct 25435 AGACCGGACGCCTGGCCAAGCAGGAACGGTCAATCACCACCTACGTGCAGGCCCTGGCTC 25494 Query 26765 AACAACAGGATGCGCTGGCCCTCCAGGGCCAACGTGCCGCCGCTGCCGTGGGCATGGGCG 26824 | |||||| || |||| || |||||||| || | || ||||||| ||| | Sbjct 25495 AGCAACAGCGAGCCCTGGAACTTGCCGGCCAACGCGCAGTACTTGGCGTGGGCCAGGGGG 25554 Query 26825 --CGCAACAGCGCCGCCTGTTCGATCAGCGTGGCAGCCTTGACGACCGATTCGCGCAGCA 26882 ||| | | ||| || || | | ||||| | ||||| || || ||||| Sbjct 25555 ACCGCCAGAACGCA--CTCAACGGCGAACTGAACAGCCAGCAAGACCGGTTTGCTCAGCA 25612 Query 26883 GCGCCTGGACCTGGCGAGCCAGTATGGTGACGGCTCGCGAGGCATGAGCCTCGACGAGTA 26942 | ||||| |||| | |||| | ||| ||||| |||| || |||| Sbjct 25613 GTCGCTGGAGTTGGCCAACCAGAAATCCGACCCGTCGCGCAACATGTCGGAGGAGGAGTT 25672 Query 26943 CAA-CGACAAGCTCAAGGCGCTGGAAG---CGAACCATGCCGCGA-TGACCCAGCAGCTG 26997 ||| ||| || | || |||||| | || ||||| | ||||| | ||||| || | Sbjct 25673 CAAGCGAAAATCCCA-GGCGCTTGCAGATGCGAACAAGGCCGCCACTGACC----AGATC 25727 Query 26998 CAACGCAACTACGCCGACCTTCAGGCCGCCCAGGGCAACTGGGTCAACGGGGCGACGTCG 27057 | | ||||| || || | || ||| |||||| ||||| || || ||||||||| Sbjct 25728 CGGCAGAACTATGCGGATGTGGAGAACGCACAGGGCGACTGGACGAAGGGCGCGACGTCG 25787 Query 27058 GCGTTCGCTGACTACATCGACTCCGCCAGGAACAGTGCGGGCCAGACCTACGAACTGTTT 27117 || | || ||||| | || || || | ||||| ||| ||||||||| | ||||| Sbjct 25788 GCCTGGGCCAACTACCTGGATTCGGCGAAGAACATTGCCGGCCAGACCAAAAGCCTGTTC 25847 Query 27118 AGTAACGCCTTCTCCGGTCTGGAGGATGCCGTCGTTAATTTCGTGATGACTGGCAAGGCG 27177 | || |||||| | | ||||||| || || || || |||| ||||| |||||||| Sbjct 25848 GGCAATGCCTTCAGCAGCATGGAGGACGCGGTAGTCAACTTCGCAATGACCGGCAAGGCA 25907 Query 27178 TCGCTGGATGACTTCGTCCGCACCATGATTGGCGACGTGGCCAGGATGGCGACCCGCCAG 27237 ||| | ||||||| | || ||| ||| ||||| | || || ||||||||| Sbjct 25908 TCGTTCTCGGACTTCGCTAAATCGATCCTTGCAGACATGGCCCGCATTGCTACCCGCCAG 25967 Score = 93.3 bits (102), Expect = 1e-14 Identities = 168/241 (70%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 10888 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACG--CAACAA 10945 |||| ||||| | |||||| ||| ||||||||||||| || || | || |||| | Sbjct 37186 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 37242 Query 10946 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACAC 11005 ||||| ||||| || | ||||| || ||| || || ||||| || || || Sbjct 37243 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 37302 Query 11006 CGCGCATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11062 || | ||||| ||||| ||| ||| ||||||||||||| |||| |||||| || Sbjct 37303 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 37359 Query 11063 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 11122 ||| | ||||| | || | ||| ||||||||||||||| |||||||| || Sbjct 37360 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 37419 Query 11123 C 11123 | Sbjct 37420 C 37420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117740415408000