Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq456 116 2e-21 seq593 98.7 7e-16 seq48 98.7 7e-16 seq1674 93.3 3e-14 seq355 91.5 1e-13 seq79 87.8 1e-12 >seq456 Length=67341 Score = 116 bits (128), Expect = 2e-21 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| ||||| ||||||||||| || || || || |||| ||| Sbjct 21374 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCC 21433 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| ||||||||||| |||||||| |||||||| | || | || || ||||| Sbjct 21434 AATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGG 21493 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | | |||| || | |||||| | || || || | ||||| || || Sbjct 21494 ATCTT-GGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTT 21552 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 |||||||| || || |||||||||||||| |||| || Sbjct 21553 TCCTGTTAAAGTCTTAACAAAGATCTGCAT-GTTGTTG 21589 >seq593 Length=58250 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| ||| ||||| |||||||| || ||||| ||||| | || || Sbjct 29129 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29070 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| ||||||||||| || | ||| || ||||| | || | ||||| ||||| Sbjct 29069 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGG 29010 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | || | || | |||||| | || || || | ||||| || || Sbjct 29009 ATCTT-GGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTCTT 28951 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGTTTA 33763 ||| || | || ||||||||||| |||||| ||||||||| Sbjct 28950 ACCAGTAAGAGTCTTTACAAAGATTTGCATA---AGTGTGTTTA 28910 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| || ||||| |||||||| || ||||| ||||| | || || Sbjct 29357 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29298 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| ||||||||||| || | ||| || ||||| | || | ||||| ||||| | Sbjct 29297 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 29238 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | |||| ||| | |||||| | || || || | ||||| || || Sbjct 29237 ATCTT-GGTCTTGACATTGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCTT 29179 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || || ||||||||||| |||||| Sbjct 29178 TCCAGTCAAGGTCTTTACAAAGATTTGCATA 29148 >seq48 Length=44992 Score = 98.7 bits (108), Expect = 7e-16 Identities = 168/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| | ||||| || ||||| ||| ||||| ||| Sbjct 22414 AAAATCTGCATGCCACCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATG 22355 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || || ||||| || ||||| |||| || | ||| ||||||||||| || | ||| ||| Sbjct 22354 TTATAGTCGGATAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGC 22295 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| | || | || || ||||| ||| || || | |||| ||| | ||| || Sbjct 22294 TGATCGGGTGGAATGCCCTCCTTGTCTTGAATCTT-GGTCTTTACATTGTCGATGGTATC 22236 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| || || || || || || || |||||||||||||| Sbjct 22235 AGATCCCTCGACCTCCAGTGTGATGGTCTTTCCAGTCAATGTCTTGACAAAGATCTGCAT 22176 >seq1674 Length=6646 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| |||||| ||| ||||| ||||||||||| || || || ||| |||| || Sbjct 131 ACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGTCCGTCCTCG 72 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 | ||| |||||||| ||||| | ||| || ||||| | || | ||||| ||||| Sbjct 71 AGTTGCTTTCCGGCGAAAATAAGACGTTGTTGATCGGGGGGGATTCCTTCCTTGTC 16 >seq355 Length=81473 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33568 ATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGC 33627 |||||||| ||||| || || || | || || | ||| ||||||||||| || | ||| Sbjct 81473 ATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATAAGACGT 81414 Query 33628 TGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGT 33686 |||||||| | || | ||||| ||||| || || || | || | ||| | || Sbjct 81413 TGCTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTT-GGTCTTGACGTTGTCGATAGT 81355 Query 33687 GTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| | ||| || || | ||||| || || || ||||| || ||||||||||| || Sbjct 81354 GTCAGATCCTTCGACCTCTAGTGTGATGGTCTTGCCAGTTAATGTCTTTACAAAGATTTG 81295 Query 33747 CATAGTTGGTGT 33758 |||||||| ||| Sbjct 81294 CATAGTTGTTGT 81283 >seq79 Length=127859 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| ||||| ||||||||||| || || ||||| | || ||| Sbjct 118830 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCC 118771 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 ||||| || ||||| || |||||||| |||||||| | || | || || ||||| Sbjct 118770 AATTGCTTGCCGGCGAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTC 118715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328647894849600