Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq48 118 3e-21 seq593 113 1e-19 seq1623 109 1e-18 seq420 95.1 3e-14 seq456 87.8 4e-12 >seq48 Length=44992 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| |||||||| || | || ||| Sbjct 22407 CAGATTTTCGTCAAGACTCTCACTGGCAAGACTATCACCTTGGAAGTCGAGGGCTCAGAC 22466 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || |||||||| || || ||| Sbjct 22467 ACCATCGATAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAACAA 22526 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| ||||| |||||| | || ||||| | || ||| |||| |||||| | Sbjct 22527 AGACTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGACTACAACATT 22586 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || |||||||||||||| Sbjct 22587 CAAAAGGAGTCTACTCTTCA 22606 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || ||||| || ||||| |||| || || | ||||| Sbjct 22179 CAGATCTTTGTCAAGACATTGACTGGAAAGACCATCACACTGGAGGTCGAGGGATCTGAT 22238 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| || || || ||| || || ||| Sbjct 22239 ACCATCGACAATGTAAAGACCAAGATTCAAGACAAGGAGGGCATTCCACCCGATCAGCAA 22298 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||||||||| | || || || | ||| | |||| || ||| | Sbjct 22299 CGTCTCATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTATCCGACTATAACATT 22358 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || ||||||||||||||| Sbjct 22359 CAAAAGGAGTCTACTCTTCAC 22379 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | ||| || ||||| || || || || |||||||| || || | ||||| Sbjct 22635 CAGAT-TTTCGTAAAGACTCTCACTGGCAAGACTATTACTTTGGAGGTTGAGGGATCTGA 22693 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||| ||||||||||| || |||||||| || || || Sbjct 22694 TACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAACA 22753 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || ||||| || |||||| | || ||||| | || | | || |||||| | Sbjct 22754 ACGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCTGACTACAACAT 22813 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 || || ||||||||||||||| Sbjct 22814 TCAAAAGGAGTCTACTCTTCAC 22835 >seq593 Length=58250 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || ||||| || || || || ||||||||||| || | |||||| Sbjct 29380 CAAATATTTGTAAAGACCCTCACTGGCAAGACTATTACTTTGGAAGTCGAGGGATCTGAC 29439 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || ||||||||| || || ||| Sbjct 29440 ACCATCGACAATGTTAAGACCAAGATTCAAGACAAGGAAGGAATTCCACCCGATCAACAA 29499 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || |||||||||||||| | || ||||| | || | |||| |||||| | Sbjct 29500 AGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCCGACTACAACATT 29559 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || || |||||||| || Sbjct 29560 CAAAAGGAATCTACTCTCCA 29579 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || || || || || || ||||| ||||| || || | |||||||| || Sbjct 28930 TTTGTAAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTTGAGGGATCTGACACCATC 28989 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || |||||| ||||| ||||| || ||||||||| || || ||| | || Sbjct 28990 GATAACGTAAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCCGATCAACAACGTCTC 29049 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||| ||||||||||| | || ||||| | || | | || |||||| | || || Sbjct 29050 ATCTTTGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACAACATTCAAAAG 29109 Query 206359 GAGTCTACTCTTCA 206372 |||||||||||||| Sbjct 29110 GAGTCTACTCTTCA 29123 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || | || ||||| || ||||| ||||||| || | |||||||| || Sbjct 29158 TTTGTAAAGACCTTGACTGGAAAGACCATCACCCTGGAAGTTGAGGGATCTGACACCATC 29217 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| ||||||||||| || |||||||| || || ||| | || Sbjct 29218 GACAATGTCAAGACCAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAACAACGTCTC 29277 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||| ||||||||||| | || ||||| | || | | || |||||| | || || Sbjct 29278 ATCTTTGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACAACATTCAAAAG 29337 Query 206359 GAGTCTACTCTTCAC 206373 || |||||||||||| Sbjct 29338 GAATCTACTCTTCAC 29352 >seq1623 Length=5066 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| ||||| || || | ||||| || |||| Sbjct 313 AAAACCCTGACTGGTAAGACCATCACCTTGGAGGTTGAGGGCTCTGATACCATCGAGAAC 254 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| ||||| || |||||||| || || ||| | |||||||| Sbjct 253 GTAAAGACCAAGATCCAAGACAAGGAAGGAATCCCCCCCGATCAACAACGTCTTATCTTT 194 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | || ||||| | ||| | |||| |||||| |||| || |||||| Sbjct 193 GCCGGAAAGCAACTTGAGGATGGTCGTACTCTTTCCGACTACAACATCCAAAAGGAGTCT 134 Query 206365 ACTCTTCA 206372 |||||||| Sbjct 133 ACTCTTCA 126 >seq420 Length=40905 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || || || ||||| || || | || ||| Sbjct 13542 CAGATTTTCGTCAAGACTCTCACTGGAAAGACCATTACCTTGGAGGTTGAGGGATCAGAC 13483 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || |||||||| || ||| ||| Sbjct 13482 ACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGACCAGCAA 13423 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| ||||| || || ||||| | || ||||| | || | | || |||||| | Sbjct 13422 CGACTAATCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTCTCTGACTACAACATA 13363 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || ||||||||||||||||| Sbjct 13362 CAAAAAGAGTCTACTCTTCA 13343 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || || || ||||| || || | ||||| Sbjct 13770 CAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCTTGGAGGTTGAGGGATCTGAT 13711 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || || || ||| || || ||| Sbjct 13710 ACCATCGACAACGTCAAGACCAAGATTCAAGATAAGGAGGGTATTCCACCCGATCAACAA 13651 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| ||||| | || ||||| | || | | || |||||| | Sbjct 13650 CGCCTTATCTTTGCCGGCAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACAACATA 13591 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || |||||||||||||||||| Sbjct 13590 CAAAAAGAGTCTACTCTTCAC 13570 >seq456 Length=67341 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || ||||| | || || || | |||||| Sbjct 21579 CAGATCTTTGTTAAGACTTTAACAGGAAAGACCATCACCCTCGAGGTTGAGGGATCTGAC 21520 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || ||||| || || ||| Sbjct 21519 ACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCCGATCAGCAA 21460 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| ||||||||||| ||||| || || | || | | ||||||||| || Sbjct 21459 CGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACCCTTTCGGATTACAACATC 21400 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| ||| | ||| | | ||||| Sbjct 21399 CAAAAGGAGTCTACTCTCCACTTGGTTCTCCGTCTTCG 21362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181608735183605