Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_025427.1 Length=54506 Score E Sequences producing significant alignments: (Bits) Value seq1130 84.2 8e-12 >seq1130 Length=54118 Score = 84.2 bits (92), Expect = 8e-12 Identities = 223/334 (67%), Gaps = 20/334 (6%) Strand=Plus/Minus Query 48786 CGCGGCCTCGGCTACAGCTTCGAGCACCGCATCCTGGTCTGCGCCGATTTCGGCATTCCG 48845 ||||| || ||||||| |||| || ||| || | | ||| ||||||| ||| Sbjct 23227 CGCGGTCTTGGCTACAAGGTCGAATACAAGATCTTGCGCGCCTGCGACTTCGGCACCCCG 23168 Query 48846 ACGATCCGCAAGCGCTTCTTCGGCGTGGCGCGCGCCGACGGCGGGCCGATCTACTGGCCG 48905 || |||||||| ||| | || | | |||||| ||||||| | | || ||||||| Sbjct 23167 ACTATCCGCAAACGCCTGTTTGTGTTCGCGCGCCGCGACGGCCTGGCCATTCGCTGGCCG 23108 Query 48906 GAGCGGACGCATGCGCCGCGCGACAAGGCGAAGGCGCTCGGCC---------TCAAGCCG 48956 | | |||||||| || | ||| || ||||| | ||| || | || || Sbjct 23107 GTACCGACGCATG-GCAACCCGA--AGTTGAAGGGGTTCGCCCAGTCTGGACTGAAACCT 23051 Query 48957 TGGGT--CGGC-GCCGATACGATCATCGACTGGTCATTGCCG-GTCAAATCGATCTTCGA 49012 ||| | |||| |||||| |||||||||||| | || ||| || | || ||| Sbjct 23050 TGGTTGACGGCCGCCGATTG---CATCGACTGGTCCATCCCTTGTCCAAGC-ATTTTCAC 22995 Query 49013 CCGCAGGAAGCCGCTGGCCGAGGCGACGCTGCGGCGGATCGCCCGCGGCGTGATGCGCTA 49072 |||| ||||||||||||||| ||||||| ||| | || ||||||||| || Sbjct 22994 GCGCAAGAAGCCGCTGGCCGACAAGACGCTGGCGCGCGTGGCTAAGGGCGTGATGAAGTA 22935 Query 49073 TGTTGTCAACGCCAAGCGGCCCTTCATCGTGCCG 49106 | | ||||| ||| | || || ||||||||| Sbjct 22934 TATCGTCAATGCCGAAGACCCTTTTATCGTGCCG 22901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174268612675080