Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq6140 161 1e-34 seq7603 159 3e-34 seq2626 93.3 4e-14 seq362 86.0 6e-12 >seq6140 Length=1248 Score = 161 bits (178), Expect = 1e-34 Identities = 381/569 (67%), Gaps = 36/569 (6%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| | |||||||| ||| ||||| | || |||||| || | || ||||| Sbjct 926 TTCGGCTACCAGATGCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACGACCAAGAAA 867 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||||||| || || |||||| ||| || ||||||||||| |||||||| ||||||||| Sbjct 866 CTGCATCTCAAATCCATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATC 807 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 ||||| | || || ||| | |||||||||||||||||| || | || ||| | Sbjct 806 GCCTATCTCAAGGAAAACGGCGTGACGATCTGGGATGAATGGGCCGACGAGAACGGCGAT 747 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 ||||| || ||||| ||| | |||||| |||||| ||| ||| | Sbjct 746 CTCGGGCCGGTCTATGGCTATCAGTGGCGCTCCTGG-----CCT-----GCGCCCG---- 701 Query 142483 GACGTCACAGACGAACCGATCGATCAGATCCGCCGGA--TCATTACTGACTTGAAGAAGT 142540 || | || | ||||||||||| || | || | | || | ||| | Sbjct 700 ------ACGGCCG-GCATATCGATCAGAT--TGCGAATCTCGTCAGTGCGATAAAGCAAA 650 Query 142541 CTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGG 142600 ||| |||| || |||| ||||| |||| ||||| || || ||||| || |||| Sbjct 649 ATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGCGCTCGTCGATGAAATGG 590 Query 142601 CACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCAT 142660 | || || || || ||| ||||||| ||| |||| | ||| | | | || || | Sbjct 589 CGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGG--CCGACGGAAAG-CTTTCCT 533 Query 142661 GCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGT 142720 ||||||| || ||||| || || || || |||||||| |||||||| || || || | Sbjct 532 GCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCT 473 Query 142721 ACGCGCTTCTCACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCGGAGACTTC 142776 | || || || || |||| || | ||| | | |||||| | | || || ||| Sbjct 472 ATGCCCTGCTGAC---CCTCA-TGGTGGCGCAGGTCACGGGTCTGCAGCCGGGTGATTTC 417 Query 142777 GTCCACACCTTCGGCAATTCGCACATCTA 142805 || ||||| | ||| || |||| |||| Sbjct 416 GTTCACACGCTGGGCGATGCGCATCTCTA 388 >seq7603 Length=749 Score = 159 bits (176), Expect = 3e-34 Identities = 406/608 (67%), Gaps = 30/608 (5%) Strand=Plus/Plus Query 142240 ATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAG 142299 ||||||||||| |||||||||||| |||| || | |||||||| || || |||| ||| Sbjct 138 ATCTTCGGTCACCAGATGCGTTTCGATCTTGCCGACGGCTTTCCGCTCGTCACCACCAAG 197 Query 142300 AAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAAC 142359 ||| | || || |||||||| || |||||||||||||||||| ||||| | ||| Sbjct 198 AAGGTCCACCTCAAGTCGATAGTCAACGAACTCCTGTGGTTCCTGCGCGGCGACTCCAAC 257 Query 142360 ATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGC 142419 | || || ||||| ||| |||| |||||||| || ||||| || | || || Sbjct 258 GTGGCGTGGCTGCACGAGCACGGCGTCTCCATCTGGGACGAGTGGGCCGACGAGAACGGT 317 Query 142420 AACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGA 142479 | ||||| || ||||||||| |||||| |||| | ||| | | | || Sbjct 318 GAACTCGGCCCCGTCTACGGCGTCCAGTGGCGTAGCTGG-CCCACCCCTT-----CGGGC 371 Query 142480 GATGACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAAG 142539 || |||| ||| | |||| |||| ||| || | | | || || Sbjct 372 GA-----GCACA-TCGACCAGATCACGCAGA-CCGTCGAGACTCTGC--GCTCCAA---- 418 Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGA-AGTCGACGACAT 142598 || |||| || || |||||| | ||||||||| || || | || | | || Sbjct 419 --CCCCGATTCGCGGCGGATCATCGTTTCGGCGTGGAACGTCGCCGACATTCCGC-AGAT 475 Query 142599 GGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAG--AAGCGTCTG 142656 ||| || | ||||| ||| | ||||| ||| |||||| ||| | ||| || Sbjct 476 GGCCCTGGCGCCGTGCCACGCTTTCTTCCAGTTCTACGTCG--CCGACGGCAAG---CTC 530 Query 142657 TCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCT 142716 || ||||||||||| ||||| || ||| |||||||||||||||||||||||| || Sbjct 531 TCCTGCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGTTCAACATCGCC 590 Query 142717 TCGTACGCGCTTCTCACACAGCTCATTGCTCGCGAATGCGGTCTGGAACTCGGAGACTTC 142776 |||||||| ||||| || | || || | | ||| || || |||| || ||| Sbjct 591 AGCTACGCGCTGCTCACCCACATGATGGCCCAGCAGGCCGGACTCGACGTCGGCGAGTTC 650 Query 142777 GTCCACACCTTCGGCAATTCGCACATCTACGATACACACGAAGAAGCTGTGAAAGAACAA 142836 ||| ||| |||| | | ||||||||||| | |||| || |||| || || Sbjct 651 GTCTGGACCGGCGGCGACTGCCACATCTACGACAATCACGTCGACCAGGTGACCGAGCAG 710 Query 142837 CTCAGCCG 142844 ||| |||| Sbjct 711 CTCGGCCG 718 >seq2626 Length=25188 Score = 93.3 bits (102), Expect = 4e-14 Identities = 97/127 (76%), Gaps = 8/127 (6%) Strand=Plus/Plus Query 19265 CGTGACCACCTCGCTGGAAACGCTTACACCGAACGCA-------AGAACGGCATCGACGT 19317 ||| ||||||| | || ||||| ||| | || ||| ||| ||||||||| || Sbjct 2825 CGTCACCACCTGGGGGGGAACGCATACTCGGAG-GCAGAGCCGGAGACCGGCATCGAGGT 2883 Query 19318 CCACAAGTACGGTGCACACATCTTCCACACTCCGAACAAGGAGATCTGGGACTACGTCAA 19377 ||||||||||||||| ||| | |||||||| | |||||| || ||||||||||||||| Sbjct 2884 CCACAAGTACGGTGCCCACCTGTTCCACACCTCCAACAAGAAGGTCTGGGACTACGTCAC 2943 Query 19378 CACGTTC 19384 | |||| Sbjct 2944 CCAGTTC 2950 >seq362 Length=339261 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 142240 ATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAG 142299 || || || ||||||||| | ||||| || |||||||||| || || |||| || Sbjct 148562 ATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAA 148503 Query 142300 AAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAAC 142359 || || ||| | || || || ||| |||||| | ||||| | | || || || || Sbjct 148502 AAACTTCATTTAAAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAAT 148443 Query 142360 ATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGC 142419 || || || | | |||| || |||||||||||||| |||||||||| || || Sbjct 148442 ATTGGCTACCTGAAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGT 148383 Query 142420 AACCTCGGACCTGTCTACGG 142439 |||| || ||||| || || Sbjct 148382 GACCTGGGCCCTGTTTATGG 148363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500411581358800