Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq45 118 3e-22 seq685 114 3e-21 seq1320 91.5 4e-14 >seq45 Length=185997 Score = 118 bits (130), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 217 GCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCA 276 ||| | |||| | |||||||||||||| ||||| || | | ||| | | ||| || Sbjct 40350 GCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTCC---CA 40294 Query 277 CTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCT 336 || ||| ||||||||| |||||| ||| | |||| |||||||||||||| | | Sbjct 40293 CTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACC 40234 Query 337 GGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTT 396 |||||| ||||| | ||| ||||| || ||| ||||||||||| ||||| || ||| Sbjct 40233 GGCGATCTCTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTT 40174 Query 397 CTCCCCTGTCTGCTTATCCTTCCA 420 || || || ||||| || |||| Sbjct 40173 CTGGCCGGTTTGCTTGTCGGTCCA 40150 >seq685 Length=77197 Score = 114 bits (126), Expect = 3e-21 Identities = 215/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 215 CGGCCATTCAT---GCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCC 271 |||||||||| | | || ||||| || || |||||||| | || || | | ||| Sbjct 10870 CGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCC 10811 Query 272 TGCCACTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTAC 331 |||| ||| || | || | |||||| | | | || ||| ||||| ||||| ||| Sbjct 10810 ---CACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATAC 10754 Query 332 TGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCT 391 | | |||||||| || | ||| ||||||| || ||||||||||| || || || Sbjct 10753 TCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCC 10694 Query 392 TTCTTCTCCCCTGTCTGCTTATCCTTCCAGGTTTCAGACGTGGCAATTGATAACTGCGCC 451 | || || || ||||||||||| |||||| |||| ||||| | | || | || Sbjct 10693 TGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTT 10634 Query 452 ACGCCGTTGCCGTTCGGCAGCGT-GCGGAATTCTGGATCGTTGCCTAAGTTGCCAATGAT 510 ||| ||||||||||||| | || ||||| ||| || ||| ||| |||||| | || Sbjct 10633 ACGGCGTTGCCGTTCGG-GGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAG 10575 Query 511 TTCTACTTTGTT 522 |||||||| Sbjct 10574 AATCACTTTGTT 10563 >seq1320 Length=7270 Score = 91.5 bits (100), Expect = 4e-14 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 296 CCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTTT 355 ||||| ||| | |||| ||| |||||||| || | || || | ||| || ||||| Sbjct 6217 CCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTG 6158 Query 356 CCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATCC 415 ||||| | |||||||| |||||||| || | || | ||||||||||||| || || Sbjct 6157 CCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCA 6098 Query 416 TTCCAGGTTTCAGACGTGGC 435 ||||||||| |||||||| Sbjct 6097 CGCCAGGTTTCCGACGTGGC 6078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135379081444530