Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq816 2511 0.0 seq1667 127 8e-25 seq334 123 1e-23 >seq816 Length=14434 Score = 2511 bits (2784), Expect = 0.0 Identities = 1602/1742 (92%), Gaps = 0/1742 (0%) Strand=Plus/Minus Query 1778 ATCGCCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGA 1837 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 9245 ATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGA 9186 Query 1838 TGAACTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGA 1897 ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 9185 TGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGA 9126 Query 1898 CATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTT 1957 ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 9125 CATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTT 9066 Query 1958 TTCGAGTCACCCACATGCTGAATTGCACCTGGGCCATGTAAGCTGATTTTATGGCCTCGA 2017 |||| ||||||||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct 9065 TTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGA 9006 Query 2018 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGACATTTCAGCTCAAGGC 2077 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 9005 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGC 8946 Query 2078 CGTTGCCGTCACTGCATAATCCATCCGGAGAGCAGGCGGTACGCATACTTTCGTCGCGAT 2137 ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct 8945 CGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGAT 8886 Query 2138 AGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGT 2197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8885 AGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGT 8826 Query 2198 CGTTCTCGTACTGTTTTCCCCATGCCAGGGCTTTGGCGTTAACTTCCGGGGCCACACCCG 2257 |||||||||||||||||||||| ||||| || || || ||||||||||| |||||||| | Sbjct 8825 CGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGG 8766 Query 2258 TGCAGACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTC 2317 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 8765 TGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTC 8706 Query 2318 CGGAGCGGGGTTTGGCTATCACGTTGTGAACTTCTGAAGCTGTGATGCCCCCGAGCCGTA 2377 | |||||||| || |||||||||||||||||||||||||| |||||| | |||||||||| Sbjct 8705 CTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTA 8646 Query 2378 ATTTTTGCCATGCATAATCTCCCTGCTCGACACCTCTCACGTCGATCCCGGTACGTTGTA 2437 |||| |||||||||| ||| ||||| |||||| |||||||||||||||||||||| || | Sbjct 8645 ATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCTGCA 8586 Query 2438 GGATAATTTCTGGTGTCATGCTGCCACCTTCTGCTCCGTGGCTTTCTGTTTCAGGAATCC 2497 ||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 8585 GGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAATCC 8526 Query 2498 AAGAACCTTCTCTGCTTCGGCCTGGGACAGTTCTGACGACGCTCGAATGTAGCGGCGAAA 2557 |||| | ||| ||||||||||||| | |||||||||||| || ||||||| ||||||||| Sbjct 8525 AAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCGAAA 8466 Query 2558 TATCTGGGAACAGAGCGGCAAGAGGTCGTCGTCCCACGTTTTTTCCATGGAAGTAAGAAG 2617 ||||||||||||||||||||| | |||||| ||||| ||||| |||| || | || || Sbjct 8465 TATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAGCAG 8406 Query 2618 GGCGTTAATTTCCGACATGGTCTCTTCGTTAACCGGGGTGATGTCGCGTTCCGGCTGACG 2677 | |||||| ||| |||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 8405 AGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTGACG 8346 Query 2678 TTCTGTAGTATATGCGGTATTTTCGACAATGCGTTCGGCTTCATCCTTGTCATAGATACC 2737 ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 8345 TTCTGCAGTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACC 8286 Query 2738 AGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGCCGTAACATCCGTTT 2797 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 8285 AGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTT 8226 Query 2798 GGGATGCGACTGCCACGGCCCCGTGATTTCTCTGCCTTCGCGAGTTTTGAATGGTGCGCG 2857 |||||||||||||||||| || |||||||||||||||||||| |||||||||||| |||| Sbjct 8225 GGGATGCGACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCG 8166 Query 2858 GCGGCATTCATCCATCCATTCGGTAACACAGATCGGATGATTACGGTCTTTGCGGTAAAT 2917 |||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||| Sbjct 8165 GCGGCATTCATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAAT 8106 Query 2918 CCGACATGTACAGGATTCATCGTCCTGCTCAAAGTCCATGCCATCAAACTGCTGGTTTTC 2977 ||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 8105 CCGGCATGTGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACTGCTGGTTTTC 8046 Query 2978 GTTGATAATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATC 3037 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8045 ATTGATGATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATC 7986 Query 3038 AGGGAAGGCGTAAATTTCTTTCGTCCATGGATTAAGGCCGTACTGGTTGGCAACGATCAG 3097 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 7985 AGGGAAGGCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAG 7926 Query 3098 CAATGCGATGAACTGCGCATCGCTGGCATCACCTTTAAATGCAGTCTGGCGAAGAGTGGT 3157 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 7925 CAATGCGATGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGCGAAGAGTGGT 7866 Query 3158 GATTAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCTGCCAG 3217 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 7865 GATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAG 7806 Query 3218 CGTTGCGAGAGCTGTACTCATCTGGTTTATACCTCTGAATCAATATAAATCTGGTGGCGG 3277 ||||||||| |||||||||||| | ||||||||||||||||||||| || ||| ||| | Sbjct 7805 CGTTGCGAGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAACCTGATGGTGA 7746 Query 3278 GCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGTTCCTGAAAATCGACATCG 3337 ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| Sbjct 7745 GCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAACTCAACATCG 7686 Query 3338 TCATCAAATGCACGGGCAATGGCTTTTTTGCTGGCTCCATGACGTTGCAGATTATCGATG 3397 |||||||||||||||| |||||||||||||||||| || ||||| | || ||||||| Sbjct 7685 TCATCAAATGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAAATGATCGATG 7626 Query 3398 CACAGCGATTCAAACAGGTGCTGGGGCAGACCTTTTTCCAGGTCGTCCGCCAGTTCAGTC 3457 || ||||||||||||| ||||||||||| ||||| |||| |||||| |||||||| | | Sbjct 7625 CAGAGCGATTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGCCAGTTCTGCC 7566 Query 3458 TCATTTTCTTCACGGGCAATTTGCCGGTAGTCTCGTGCCCATGACTGCTCTTCAATGCGA 3517 || || ||||||||||| || ||| |||||| || ||||| ||| | |||| ||| Sbjct 7565 TCTTTCTCTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGCCTCAAGACGA 7506 Query 3518 TC 3519 || Sbjct 7505 TC 7504 Score = 145 bits (160), Expect = 3e-30 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 60834 GCTCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAA 60893 ||||||||| |||||||||||| ||||||| || | ||| |||||||||||||| ||| Sbjct 10204 GCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCTTGCTGGCAACTGGCACAA 10145 Query 60894 GTTCGGCATCCGCGAACAGCCTGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAA 60953 || || || || |||| ||| | |||| || ||||||||||||||||||||||| ||| Sbjct 10144 GTCCGACAACCCTGAACGGCCAGTCGTCTTCGTTCATCTATCGGATCGCCACACTCACAA 10085 Query 60954 CAATGAGTAGCAGAT 60968 |||||||| |||||| Sbjct 10084 CAATGAGTGGCAGAT 10070 >seq1667 Length=2119 Score = 127 bits (140), Expect = 8e-25 Identities = 165/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 25241 GAGGCGGGGT-ATGTACCAGATGGAAAAAATCACAACAGGTGTGTCATACACCACGTCAG 25299 |||| ||||| ||| | ||||| || | ||||| ||||| | || ||| |||| Sbjct 1865 GAGGTGGGGTTATGAAATCCATGGATAAGTTAACAACGGGTGTCGCCTATGGCACCTCAG 1924 Query 25300 CGGTGGGAACGGGCTACTGGTTCCTGCAGTTGCTGGACAGGGTTTCCCCGTCTCAGTGGG 25359 | | | | || |||||||| | ||| |||| || | || | || || ||||||| Sbjct 1925 CAGGTAGTGCCGGTTACTGGTTTTTACAGCTGCTCGATAAAGTCACGCCCTCACAGTGGG 1984 Query 25360 CGGCAATAGGCGTGCTGGGGAGTCTGCTGTTTGGTCTGCTGACGTACCTGACGAACCTGT 25419 | |||||||| |||||||| || ||| | ||||| ||||||||||||||||| ||||| | Sbjct 1985 CAGCAATAGGTGTGCTGGGTAGCCTGGTATTTGGCCTGCTGACGTACCTGACAAACCTTT 2044 Query 25420 ATTTCAAAATCAGAGAGGACCGGCGTAAGGCGGCGCGGGGAGAGTAA 25466 ||||||| || | ||| || ||| ||||| ||| | || || ||| Sbjct 2045 ATTTCAAGATTAAAGAAGATAAGCGCAAGGCTGCGAGAGGTGAATAA 2091 >seq334 Length=953 Score = 123 bits (136), Expect = 1e-23 Identities = 138/177 (78%), Gaps = 13/177 (7%) Strand=Plus/Minus Query 28430 TGCGCCGCATCGTCGCCGTATTCCCGCATTAACAGAGACCGCAGCC--ACC-----TTA- 28481 ||||| | ||||||||||||||||||||||||| ||||| |||| || || Sbjct 448 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 389 Query 28482 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 28540 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 388 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 330 Query 28541 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACC 28597 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||| Sbjct 329 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACC 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200477775421300