Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq98 100 3e-16 seq593 89.7 5e-13 seq404 84.2 2e-11 >seq98 Length=772300 Score = 100 bits (110), Expect = 3e-16 Identities = 299/453 (66%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 46824 GCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCC 46883 ||||| || ||||||| ||||| ||| |||||| | || || || || || Sbjct 410550 GCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCTGT 410491 Query 46884 GCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTG 46943 | || || | | |||| | |||| | ||||| || || || || ||||| |||||| Sbjct 410490 TCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAATGAGTTG 410431 Query 46944 ATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTG 47003 || || | || || || | || || ||||| || || ||| || | || | Sbjct 410430 ATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATGCTCAAA 410371 Query 47004 AATGAGAAATTAAACTCGGACA-CGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGA 47062 ||| ||| | | | ||| || || || | || | | || ||||| ||||| Sbjct 410370 AAT---AAACTGAGCCAGGAAGTCGTTCATG-GAATTATCCGCGACGCGGTAGAAATCGA 410315 Query 47063 AAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTAT 47122 |||||| ||| |||| | || |||| || ||| || | || ||||| ||| | || Sbjct 410314 AAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAACTGAT 410255 Query 47123 GTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGG-TGCAG---CTCGGACA-ACCG 47177 || | |||||||||||||| || || | | ||| ||||| || || | ||| Sbjct 410254 GTCACAGTATATTGAGTTTGTTGCAGA----CAGATGGCTGCAGGAACTGGGTTATACCA 410199 Query 47178 AAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAA 47237 |||||| | | ||| ||||||||||| |||||| | | || || || | |||||| Sbjct 410198 AAATATATCA-TGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAAA 410140 Query 47238 ACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 |||||||| || |||||||| || || || ||| Sbjct 410139 ACCAATTTCTTTGAGAAACGTGTGGGTGATTAT 410107 >seq593 Length=58250 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | ||||||| |||||||||||||||||| | ||||| ||| || Sbjct 29814 AACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTC 29755 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| || || |||| | |||| ||||| |||||||| || || || || || || || Sbjct 29754 GAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTC 29698 >seq404 Length=78127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 146584 GTGCGCAAATAATACATGCCCGTTTTGAGGCCACATC-GCCACGAGTGATTGTGAATCGA 146642 ||||||||||| ||||| || || || | || | || |||||||| | ||| ||||| Sbjct 48004 GTGCGCAAATAGTACATTCCAGTCTTCAATCC-CTTCTTCCACGAGTAAAAGTGCATCGA 48062 Query 146643 AGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCTTTGATCTAT 146702 |||| |||| ||| ||||| || | ||||| || || ||||||||||| || Sbjct 48063 GGTCAACTTGGCAAACGATGGCTCAGCAATGAAAACGTTGAAGCTCTGGCTTTGATCAAT 48122 Query 146703 GAAAGCGTTGCGGTCGGCCGCCATCTCAATCA-TGCGTTTTGTCTTCATTTCCCAAGCGG 146761 | | || |||||||| ||||| || || | || ||| | || |||||| | | Sbjct 48123 GTAGGCACCACGGTCGGCAGCCATATCGATAAGTGTACGTTGAC-GAATCTCCCAAACAG 48181 Query 146762 TTTTGTACAGCCCCTTAACGCTATCTGGAATACC 146795 | ||||| ||| |||| | | ||||||||||| Sbjct 48182 TCTTGTAGAGCTCCTTCAAGTCCTCTGGAATACC 48215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476527763251800