Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq593 89.7 5e-13 seq2393 87.8 2e-12 >seq593 Length=58250 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || | || || || | || || | |||||||| | Sbjct 29377 ATGCAAATATTTGTAAAGACCCTCACTGGCAAGACTATTACTTTGGAAGTCGAGGGATCT 29436 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| || || || || || || |||||||| Sbjct 29437 GACACCATCGACAATGTTAAGACCAAGATTCAAGACAAGGAAGGAATTCCACCCGATCAA 29496 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||||||||| || ||| || |||||||| |||| | | || ||| ||||| Sbjct 29497 CAAAGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCCGACTACAAC 29556 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| ||||| || | ||||| || Sbjct 29557 ATTCAAAAGGAATCTACTCTCCATTTGGT 29585 >seq2393 Length=1004 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25271 AAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 25330 || || || || || ||||| || ||||||||||||| || ||| || ||||||||||| Sbjct 1002 AAGGAAGGAATCCCACCCGACCAACAAAGACTCATTTTCGCCGGAAAGCAACTCGAAGAC 943 Query 25331 GATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | | | | | | ||| ||||| |||||||| |||||||| ||||||| || Sbjct 942 GGTCGCACTCTTTCCGACTACAACATTCAAAAGGAATCCACACTTCATTTGGT 890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445016480661600