Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq456 96.9 3e-15 seq48 93.3 4e-14 seq420 84.2 2e-11 >seq456 Length=67341 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||||||| ||||||||||| | | ||| || |||| ||| Sbjct 21374 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCC 21433 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||||| || ||||| ||||| || ||||| || | || | | ||||||||| | Sbjct 21434 AATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGG 21493 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTC-GCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||| | | | | | ||||| | || || ||||| | ||||| || || Sbjct 21494 ATCTTGGCCTTGACATTCTCAATGGTGTCAGATC-CCTCAACCTCGAGGGTGATGGTCTT 21552 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| || ||||| |||||||| Sbjct 21553 TCCTGTTAAAGTCTTAACAAAGATCTGCAT 21582 >seq48 Length=44992 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| ||||||||||||||| || |||| Sbjct 22402 CCACCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGAT 22343 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || ||||| || ||||| || | || ||||| || | ||| Sbjct 22342 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGA 22283 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC-GCTCGATTCCAC 35688 | || ||||||||| ||||| ||| | | | | | || || | || || || Sbjct 22282 ATGCCCTCCTTGTCTTGAATCTTGGTCTTTACATTGTCGATGGTATCAGATC-CCTCGAC 22224 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| ||||| || || || ||||| || || ||||| |||||||||| Sbjct 22223 CTCCAGTGTGATGGTCTTTCCAGTCAATGTCTTGACAAAGATCTGCATTC 22174 >seq420 Length=40905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| |||| | || || | || || || ||||| || ||||| Sbjct 13810 CTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGACCATCCTCGAGTTGCTTGCCGGCAAA 13869 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || || || || | || | | |||||||| |||||| ||| | | | Sbjct 13870 GATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTTACATT 13929 Query 35665 TGCCACCGTGTC-GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | ||||| | || ||| ||||||| ||||| || || || |||||||| || | Sbjct 13930 GTCGATGGTGTCTGATC-CTTCGACCTCCAGTGTGATGGTCTTTCCAGTCAAAGTCTTGA 13988 Query 35724 CAAATATCTGCATTC 35738 | || |||||||||| Sbjct 13989 CGAAAATCTGCATTC 14003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450714682945400