Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq45 107 7e-19 seq4259 100 1e-16 seq6789 87.8 6e-13 >seq45 Length=185997 Score = 107 bits (118), Expect = 7e-19 Identities = 230/335 (69%), Gaps = 24/335 (7%) Strand=Plus/Minus Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCAC--CACGGACTGCGCCTGCT 36770 |||||||||| || ||||| ||||||| ||||||| | | | ||| | ||| || Sbjct 136112 TCGGCCCTGCCGGTACCGGCAAGACCTACCTGGCCGTGGCCTGCGCGGTCGATGCC--CT 136055 Query 36771 GGAGGCCAAGGAAATCCAGCGACTCGTCATCACT----CGCCCCGCCGTCGAGGCCGAGG 36826 |||| | || | | ||||| | || | || || || || || || |||| | Sbjct 136054 GGAGCGCGAGCAGGT---GCGACGCATCCTG-CTGGTGCGTCCGGCGGTGGAAGCCGGCG 135999 Query 36827 AGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGA 36886 ||||||| |||| ||||||||| | | | ||||||| | ||||||||| |||| Sbjct 135998 AGAAGCTGGGCTTTTTGCCCGGCGACCTGGCCCAGAAGATCGACCCGTACCTGCGCCCGC 135939 Query 36887 TGCTGGACGCGGTGATCGACCTGGTTGGCC-CGACGA--TGGCCAAGCGCCTGCAGGAGA 36943 | |||||| | ||| || | ||| ||| | ||||||||| || ||| Sbjct 135938 TCTACGACGCGCTCTACGAGATGCTCGGCTTCGAATACGTGGCCAAGC---TGATCGAG- 135883 Query 36944 CCCGCCAGCT---CGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACA 37000 |||||| | ||||||||||||||||||||||||||| ||||| || | ||| ||| Sbjct 135882 --CGCCAGGTGATCGAGATCGCCCCGCTGGCCTACATGCGTGGCCGTACGCTGAACAACA 135825 Query 37001 CGTTCCTCATCGCCGACGAGATGCAGAACGCCACC 37035 ||| |||| |||||| | |||||| ||||| Sbjct 135824 GCTTCATCATTCTCGACGAAAGCCAGAACACCACC 135790 >seq4259 Length=4273 Score = 100 bits (110), Expect = 1e-16 Identities = 242/358 (68%), Gaps = 10/358 (3%) Strand=Plus/Minus Query 36724 GGCACCGGGAAGACCTTCCTGGCCATTCACCACGGAC-TGCGCCTGCTGGAGGCCAAGGA 36782 || ||||| ||||||| ||| ||||| ||| || | | | | || |||||||| | Sbjct 4271 GGTACCGGCAAGACCTACCTCGCCATGG-CCAAGGCCGTTCAGGCGTTGCAGGCCAAGCA 4213 Query 36783 AATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGGCTACCT 36842 || || || || | || | || || |||||||||| ||| || |||| || Sbjct 4212 GGTCTCTCGGATCATCTTGACCAGGCCGGCAGTCGAGGCCGGCGAGCGACTGGGCTTTCT 4153 Query 36843 GCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCTGGACGCGGTGAT 36902 ||||||| | | |||||||| | |||||| || |||| ||| ||||| || Sbjct 4152 GCCCGGCACGCTGCACGAGAAGATCGATCCGTATCTCCGCCCGCTGCACGACGCATTGCA 4093 Query 36903 CGACCTGGTTGG-CCCGA--CGATGGCCAAGCGCCTGCAGGAGACCCGCCAGCTCGAGAT 36959 |||| || | | ||||| |||| | ||| |||||| || | ||||| | Sbjct 4092 CGACATGATGGATCCCGAGGCGATTCCGAAGTTGATGCAGG---CCGGAGTCATCGAGGT 4036 Query 36960 CGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTCCTCATCGCCGACGA 37019 ||| ||||| ||||||||||| ||||| || |||||||| | ||| ||||| ||||| Sbjct 4035 CGCTCCGCTCGCCTACATGCGTGGCCGGACGCTCAACGACGCCTTCATCATCTTGGACGA 3976 Query 37020 GATGCAGAACGCCAC-CCCGCGACAGGCCGCGCTGCTGGTGACCCGCCTGGGCTTCGG 37076 ||||||| |||| ||| | ||| | || | |||||||||| || ||||| Sbjct 3975 AGCGCAGAACACCACGGCCGAG-CAGATGAAGATGTTCCTGACCCGCCTCGGGTTCGG 3919 >seq6789 Length=872 Score = 87.8 bits (96), Expect = 6e-13 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4173 TTTTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTG 4232 |||| || || ||||| |||||||| || |||||||| || ||||||||| | ||||| Sbjct 453 TTTTTCGGCTTTTCGGCTATGCCGGTACCGGCAAGACGACGCTGGCCCGCTATTGCGCTG 512 Query 4233 AGAACGTGGACGGGCTTGTGCTGTTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCT 4290 || | | ||||| |||| ||||||||| |||||||||||||| | ||||| Sbjct 513 AGCATATTGACGGCGACGTGCAGTTCGCCGCTTTCACCGGCAAGGCCGCGCAGGTCCT 570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180766731797190