Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq98 269 4e-67 seq531 190 3e-43 seq689 129 8e-25 >seq98 Length=772300 Score = 269 bits (298), Expect = 4e-67 Identities = 799/1225 (65%), Gaps = 28/1225 (2%) Strand=Plus/Plus Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||| || ||||||| ||||| ||||| | ||||| | | || ||| || ||| || Sbjct 408316 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 408375 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 ||||| || | | || ||||| ||||||||||||||||| || || | ||| | ||| Sbjct 408376 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 408435 Query 69127 CTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 || || | | | || ||| ||| |||||| | |||||||||||| ||| |||||| Sbjct 408436 CTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATT 408495 Query 69187 TTATTAAGATTTCGGA----CTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA 69242 ||||| || || || || || ||| | || | || ||| || |||||| Sbjct 408496 TTATTCAGGTTCAGGGTAGCCTGATAGGTTA----CATCATATAATTTCTGATGATCAAA 408551 Query 69243 TCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTC 69302 ||| | || ||||| | || || | || || || ||||| || || ||||| Sbjct 408552 CTCTCCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTC 408611 Query 69303 AT---TAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCC 69359 | | ||| | ||| | ||| || |||||||| || || || |||||| || || Sbjct 408612 GTCTTTGGAAGT---ATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCC 408668 Query 69360 CAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACC 69419 | ||||||||| || || |||| || || || || | | | | || || || Sbjct 408669 TAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCC 408728 Query 69420 AGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTT 69479 ||||||||||| || || | ||| | ||||| | || || || ||| || Sbjct 408729 GGTTTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAAT---GGTTTT 408785 Query 69480 ---GTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAAC 69536 | ||| |||||||| || | ||||| |||||||| | || | Sbjct 408786 ACGGGCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCAAAGCA 408845 Query 69537 ATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAAC 69596 ||| ||| ||| || ||||| ||||| | || ||| | | | || | || Sbjct 408846 ATCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTAC 408905 Query 69597 TCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTT 69655 | | |||| || || || | |||||| || ||| || | |||||||| | | || Sbjct 408906 CCTTCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTT 408964 Query 69656 CTTCATTTCCTGTAttttttttA---AGATCGAGAAACTCCATAATATCAGAATGCCATG 69712 |||| || || || |||||| || || ||||| || | ||| | |||||||| Sbjct 408965 CTTCTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATG 409021 Query 69713 GTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGG 69772 | || || || || || | | || |||||| ||| ||||| || | || | || Sbjct 409022 GCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGG 409081 Query 69773 CAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAG 69832 | || | ||| | ||| ||| ||| || | ||| ||||| | || ||||||||| Sbjct 409082 CGGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCAC 409141 Query 69833 AAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTT 69892 ||||||| ||| | || || || ||| || || ||| || || ||||| ||| Sbjct 409142 CAATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTT 409201 Query 69893 TAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA 69952 || ||| ||| |||| || || || || || || || || || || || || Sbjct 409202 GTGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCA 409261 Query 69953 TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAG 70012 || | || | ||| ||| |||||||||| | | || | ||||||||||| || | Sbjct 409262 TGGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTG 409321 Query 70013 GAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTA 70072 | | ||| || || ||||| ||| | ||| || || ||| |||| || ||| | Sbjct 409322 GGGTTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAA 409381 Query 70073 TATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCG 70132 |||| | ||||| |||| || |||||||| |||| ||| || || |||||||| Sbjct 409382 TATCTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAA 409441 Query 70133 TTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGT 70192 ||| | |||||||| ||| || |||||||| || ||||||||||||||||| | | Sbjct 409442 TTTGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGA 409501 Query 70193 ATGAAAAGTCTCTTTCGTAAATAAT 70217 || ||| || || || |||||||| Sbjct 409502 ATCCAAAATCCCTGTCATAAATAAT 409526 Score = 269 bits (298), Expect = 4e-67 Identities = 591/877 (67%), Gaps = 9/877 (1%) Strand=Plus/Plus Query 39324 TTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 39383 ||||||| || ||||| || |||||||| || ||||| |||||||||| || || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 39384 TTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAA 39443 | ||||| |||||||||||||| || |||| |||| |||| || | || | ||| | Sbjct 410160 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 410219 Query 39444 TCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA 39503 | |||| ||||||||||| || || || | ||||| || |||||| || || | Sbjct 410220 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 410279 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | ||| || | || || || | ||| || |||||||| ||||| || || || | Sbjct 410280 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 410339 Query 39564 -TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || ||| || || || | ||| || || | |||| | | | |||||| Sbjct 410340 TTCCATG-AACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCA 410398 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || |||||||| | ||||||||||| ||| || || ||| ||| || || || ||| Sbjct 410399 AATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGC 410458 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG-AAAAGAAGATGCC 39741 || || || | ||||| | ||| || || | | || ||| ||| | ||||| ||||| Sbjct 410459 ATCAGGCCTCTTTTTTTCAACCAGAAGATCG-AACAGAAGCTCCCGCTGAAGAAAATGCC 410517 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTT 39801 ||| ||||| || || || || | | || | || || | | | ||||| Sbjct 410518 TTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCG 410574 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||| || ||||| |||||||||||||| | || |||| |||| || || Sbjct 410575 CAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCT 410634 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 | |||||| ||| |||||||| ||| ||||| || | ||| ||| |||| || || Sbjct 410635 GTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTG 410694 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 ||||||||| ||| ||||| || || |||||||| | ||||| | || ||||| || Sbjct 410695 GATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTC 410754 Query 39982 TGAACA-AAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 | || || | | || | |||||||| || || || ||||| || |||||||| | Sbjct 410755 -GCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 410813 Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATAT 40100 | | || ||| ||| |||| || | | | || || | ||||| || | Sbjct 410814 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 410873 Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160 | | || | || | ||||||||| ||||| || || || ||| || ||||| | Sbjct 410874 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 410933 Query 40161 TCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| || ||| | |||| || || |||| |||||| Sbjct 410934 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 410970 >seq531 Length=89189 Score = 190 bits (210), Expect = 3e-43 Identities = 297/422 (70%), Gaps = 2/422 (0%) Strand=Plus/Plus Query 39486 CACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGT 39545 ||| |||||||||||| | | ||||| | || ||| |||| |||||||||||| || Sbjct 87738 CACTATTCATTCCTATTAAGTCCACTGGCAAAGACTCTGTTACAAACTCTTTTTCACAGT 87797 Query 39546 CTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCG-GTGGATGCAATAAATGT 39604 |||| || ||| || || || || | | || ||| || | | ||| | Sbjct 87798 CTACCGCATCTCGAATGATGGACTCTATTGTCG-ATGGGTCGAGTTTGTTTAGTAACTTG 87856 Query 39605 TTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTA 39664 || | | || ||||| ||||||||||||| || ||||| | ||| || | ||||| Sbjct 87857 CTATAGAGTAGACAGGCAAAGTCACAATGTAAACCTTCATCGCGACTGATATACTCGTTC 87916 Query 39665 GAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT 39724 || | || |||||||| | ||||| || |||||||| ||||| | | ||| | Sbjct 87917 GAGTGGGCCAGACCAGGCATCAAGCCACGTTTCTTGAGCCAGAATATCGAACAGAAACTT 87976 Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA 39784 ||||| || ||||| ||||| |||||||||||||| || ||||||||| | | || | Sbjct 87977 CCAGAGAAAAAGATACCTTCGACTGCTGCAAATGCCACCAGTCTCTCTGCAAACGATGCA 88036 Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || | |||||| | ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 88037 GAGTTGTTTATCCAACGAAGAGCCCAATCAGCCTTCTTTTTGACACATGGAATTGTCTCT 88096 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 |||||||| || | | |||||| ||||||||| |||||||||||| || ||| Sbjct 88097 ATAGCATTGAATAACTTGGTCTTTTCAAATGTATCTTTAATATATGTATCTATCAATAGA 88156 Query 39905 CT 39906 || Sbjct 88157 CT 88158 >seq689 Length=46727 Score = 129 bits (142), Expect = 8e-25 Identities = 206/294 (70%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| || || | || || || | || || || ||||| ||||| || | Sbjct 18315 CAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAAA 18256 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||| | |||||||| ||||||||||| || | | ||| ||||| || ||| Sbjct 18255 CCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTACCAGAGAAAAAG 18196 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTATGTA 39794 || || || || |||||||| || || | | ||| | | ||||| | ||| | Sbjct 18195 ATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGACTTGGA--ATTTGAGA 18138 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 |||| || |||||| ||||| |||||||| ||||| || || || ||||| ||||| | Sbjct 18137 TCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCATTGA 18078 Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | | || |||||| | || |||| ||||||||| ||||| | ||||| Sbjct 18077 ACAAATTGGCCTTTTCAACTGGATTCTTAATATATGTATCGATTAATAAACTAT 18024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686788548028200