Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq24 185 2e-42 seq816 109 1e-19 >seq24 Length=857 Score = 185 bits (204), Expect = 2e-42 Identities = 203/271 (75%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 36748 ATGAGCAGAGTAACTGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 36807 |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 471 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 530 Query 36808 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAA--- 36864 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||| Sbjct 531 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 590 Query 36865 GCCACA------------------TCCACAATCGCTGACATGCAGAAGCGTCAACGTGAT 36906 |||| | | |||| |||||||||||| ||| || |||||| Sbjct 591 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 650 Query 36907 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 36965 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 651 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 709 Query 36966 AAGCCTCCGTGCTGATGTTTCTGCTGGGCGT 36996 || |||| || |||| | ||||| ||| Sbjct 710 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 740 >seq816 Length=14434 Score = 109 bits (120), Expect = 1e-19 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 20078 AATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 20137 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11440 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 11381 Query 20138 TAC 20140 ||| Sbjct 11380 TAC 11378 Score = 80.6 bits (88), Expect = 7e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 17787 ACTCCACCTTTTCATCAATCCAGTCCGCCAACCACTGCATCATTTCTCTGCGCTTAACG 17845 ||||||| |||||||||| ||| |||| | |||||||||||||||||||||||||| || Sbjct 13111 ACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCG 13053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123832202118240