Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq58 93.3 6e-14 seq6140 84.2 3e-11 >seq58 Length=338205 Score = 93.3 bits (102), Expect = 6e-14 Identities = 177/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 198350 CGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCTTACGCATTACTCGTG 198409 ||||| | ||| | ||||||||| |||||| ||||| ||| | || || ||| Sbjct 80372 CGCAGCTCAGATGTATTCCTCGGCCTGCCGTACAACACCGCTGCCCTGGCGTTGCTCACC 80313 Query 198410 CACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTCATTTGGACGGGCGGTGAC 198469 || ||| | ||||||||| || || | || ||| |||| || || ||| Sbjct 80312 CATATGCTGGCCCAGCAGTGCGACCTGATCCCTCACGAGATCATCGTCACCACGGGCGAC 80253 Query 198470 ACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTCCAGCTGACGCGTGAGCCGTTA 198529 || || |||| || || |||| ||| | || ||||||| |||| |||| Sbjct 80252 ACCCACGCCTACAGCAACCACATGGAACAGATCCAGACCCAGCTGGCGCGCACGCCGAAG 80193 Query 198530 CCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATCTATCTTCGATTATAAATTCGAA 198589 | ||| ||||| | |||||||| ||||| | || |||| |||||| ||||||||| Sbjct 80192 AAGCTGCCGGAACTGGTGATCAAGCGCAAACCCGCGTCGATCTACGATTACAAATTCGAA 80133 Query 198590 GATTTTGAGATCGTTGGGTAT 198610 |||||||| ||||| || ||| Sbjct 80132 GATTTTGAAATCGTGGGCTAT 80112 >seq6140 Length=1248 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG 197725 ||||| ||||| || ||||| || | ||| || || || ||||||||| || ||| || Sbjct 959 GGCGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTG 900 Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785 ||||| || | ||||| |||||||| || || || || ||||| || Sbjct 899 TCGGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAG 840 Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845 |||||||||||||| | || || || |||| | ||||| | || |||||||| || Sbjct 839 CTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACG 780 Query 197846 ATTTGG 197851 || ||| Sbjct 779 ATCTGG 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769058943045400