Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq98 123 2e-23 seq531 120 2e-22 >seq98 Length=772300 Score = 123 bits (136), Expect = 2e-23 Identities = 472/728 (65%), Gaps = 30/728 (4%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT---GCG 43912 || ||||||||||| || ||||| || || |||||||| | | ||| || | | Sbjct 410814 GCTTTTTTTGCTGCAAGTGACGGCATTGTAAATGAAAACCTTGC-AGTGAACTTCATGAG 410756 Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 | ||||| || | || ||||| || ||||||||||| || || || || ||||| Sbjct 410755 C--GAAGTACAGCTTCCCGAAGCCCGTTGTTTTTATGGCTTCCAGATCATGATGGAAAAC 410698 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG 44032 || || || |||| || || ||||| ||||| || || |||||| | || || Sbjct 410697 ATCCACTCTGAAACCTATGCGCTGCTGATCGATACCTATATTAAAGATCCTGAAGAAAAA 410638 Query 44033 CATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092 | | |||| |||| |||| || || ||| | || | |||||||| ||||| Sbjct 410637 GACAGGCTGTTCCATGCCGTAGAGACGGTTCCTTGTGTAAAGAAAAAAGCAGAATGGGCA 410578 Query 44093 CTTAAATGGATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149 | ||||| | |||| |||| ||||| | || || || || | Sbjct 410577 TTGCGCTGGATTGAGGGCGGAAAT------TTTGCCGAACGTTTGGTGGCTTTCGCCGCA 410524 Query 44150 GTGGAAGGCATTTTCTTTT-CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 ||||||||||||||||| | ||| | | || | || || ||||| || ||| |||| Sbjct 410523 GTGGAAGGCATTTTCTTCAGCGGGAGCTTCTGTT-CGATCTTCTGGTTGAAAAAAAGAGG 410465 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 ||||||| ||| | || ||| |||||||| || | ||||| || | ||||| Sbjct 410464 CCTGATGCCAGGGCTAACCTTTAGTAATGAGTTGATTTCCAGAGATGAGGGGATGCATTG 410405 Query 44269 CGATTTTGCTTGCTTG-TTACTTGGATA-TCTAGGAGACGATAAGCCTTCATGTAAGACA 44326 || ||||| ||| || || | || || | | | | |||| | ||| | Sbjct 410404 TGAATTTGCCTGCCTGCTTTATAAAATGCTCAAAAATAAACTGAGCCA----GGAAGTCG 410349 Query 44327 ATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTA 44386 | | || ||| | || || ||| | || ||| | |||||||| ||| || || Sbjct 410348 TTCATGGA-ATTATCCGCGACGCGGTAGAAATCGAAAAGGAATTTATTACAGATGCCTTG 410290 Query 44387 CCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCA 44446 || || | || || ||||||| | ||||| || |||||||| | ||||| Sbjct 410289 CCGGTTGCCCTGATCGGGATGAATGCAAAACTGATGTCACAGTATATTGAGTTTGTTGCA 410230 Query 44447 GATCGTTTACTTTTGGAACTGGGTTGCGATAA-ACACTATATTGTACAA--AACCCGTTT 44503 || | | || ||||||||||| ||| | | ||||| | | | || |||||| Sbjct 410229 GACAGATGGCTGCAGGAACTGGGTT---ATACCAAAATATATCATGCCACCAATCCGTTT 410173 Query 44504 GATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGA 44563 ||||||||||| | || || || |||||||||| || || ||||| ||||| || || Sbjct 410172 GATTTTATGGAGATGATCTCCCTGCAAGGCAAAACCAATTTCTTTGAGAAACGTGTGGGT 410113 Query 44564 GAATATCA 44571 || ||||| Sbjct 410112 GATTATCA 410105 >seq531 Length=89189 Score = 120 bits (132), Expect = 2e-22 Identities = 210/296 (71%), Gaps = 10/296 (3%) Strand=Plus/Minus Query 43990 CAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTAATG 44048 |||||| |||||||||| || || |||||| || ||| | | | || || |||| Sbjct 88159 CAGTCTATTGATAGATACATATATTAAAGATACATTTGAAAAG-ACCAAGTTATTCAATG 88101 Query 44049 CGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT 44107 | ||||| ||| | || || | | ||| | || || || ||||| ||| |||||||| Sbjct 88100 CTATAGAGACAATTCCATGTG-TCAAAAAGAAGGCTGATTGGGCTCTTCGTTGGATAAA- 88043 Query 44108 TCAAAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCT 44165 ||| | | || |||| ||| |||| || || ||||||| || ||||| || || | Sbjct 88042 -CAACTCTGCATCGTTTGCAGAGAGACTGGTGGCATTTGCAGCAGTCGAAGGTATCTTTT 87984 Query 44166 TTTCAGGATCGTTTGCGGCC-ATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224 | || ||| |||| | | ||||| ||| | |||||||| || ||||||||||| || Sbjct 87983 TCTCTGGAA-GTTTCTGTTCGATATTCTGGCTCAAGAAACGTGGCTTGATGCCTGGTCTG 87925 Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | || || |||| || ||||| |||||||| |||||||| || ||||| || Sbjct 87924 GCCCACTCGAACGAGTATATCAGTCGCGATGAAGGTTTACATTGTGACTTTGCCTG 87869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397388159850025