Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq593 109 5e-19 seq420 95.1 1e-14 seq1623 93.3 4e-14 >seq593 Length=58250 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||||||| | ||||| || |||||||| |||||||| Sbjct 29147 CCTCCACGAAGGCGGAGTACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 29088 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || ||||| || || ||||| | |||||||| |||||||| || || Sbjct 29087 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGA 29028 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| | || | | | || | ||||| | | ||||| Sbjct 29027 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACC 28968 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | || || || ||||| || ||||||||||||||| Sbjct 28967 TCCAAGGTGATGGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCATA 28920 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || |||||||| ||||||||| | | || | || ||| Sbjct 29813 ACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCG 29754 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || ||||| | |||||||| |||||||| || || | ||||| || || | Sbjct 29753 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTCCTGG 29694 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | || | ||||| | | | || || || | || |||| ||| Sbjct 29693 ATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAATAGTCTTG 29634 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || ||||| || ||||||||||||||| || Sbjct 29633 CCAGTAAGAGTCTTTACAAAGATTTGCATACCT 29601 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||||| || | ||||| || |||||||| |||||||| Sbjct 29375 CCTCCACGAAGGCGGAGTACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAG 29316 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || ||||| || || ||||| | |||||||| |||||||| || || Sbjct 29315 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGG 29256 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| | || | | || | ||||| | | |||||| Sbjct 29255 ATTCCTTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATCCCTCAACT 29196 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || | || || |||| || || ||||||||||||||| || Sbjct 29195 TCCAGGGTGATGGTCTTTCCAGTCAAGGTCTTTACAAAGATTTGCATACCT 29145 >seq420 Length=40905 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||||| || | || || || |||||||| ||||||||| Sbjct 14003 CCTCCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 14062 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || || || || || || | ||||| | |||||||| || || Sbjct 14063 AGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGGG 14122 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| | || | | | || | ||||||| | | || || Sbjct 14123 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGACC 14182 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| |||| || || |||||||||||||| Sbjct 14183 TCAAGTGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 14229 >seq1623 Length=5066 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||||||| | ||||| || ||||| || ||||||||| Sbjct 102 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAA 161 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || || || || ||||| | || ||||| |||||||| || || Sbjct 162 AGAGTACGACCATCCTCAAGTTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGG 221 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| | || | | | || | || || | | | ||||| Sbjct 222 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACGTTCTCGATGGTATCAGAGCCCTCAACC 281 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAG 27249 || | || || | || || ||||| ||||| |||||||||||||||| Sbjct 282 TCCAAGGTGATGGTCTTACCAGTCAGGGTTTTAACAAAGATTTGCATAG 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424861869673560