Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq689 113 1e-19 seq404 93.3 1e-13 >seq689 Length=46727 Score = 113 bits (124), Expect = 1e-19 Identities = 104/131 (79%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 443764 TCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTG 443823 || ||||| ||| | || ||||||||| | |||| ||| |||||||| ||||| || Sbjct 18218 TCAATCTTTTGGCTCAAGAAGCGTGGATTGATGCCAGGTTTGACCTTTTCCAACGAGTTG 18277 Query 443824 ATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATC 443883 ||||| || ||||| |||||||| |||||||| |||||||| ||||||||||| | || Sbjct 18278 ATCAGCCGTGACGAAGGTTTGCACTGCGACTTTGCCTGTCTGCTCTACACCAAGC---TC 18334 Query 443884 GTGCACAAGCT 443894 || ||||||| Sbjct 18335 GTCAACAAGCT 18345 >seq404 Length=78127 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || ||||||||| || |||||||||||||| ||||| || ||||| ||| Sbjct 49497 CCCATGCTTCGCGTGTTCAACGACACTGCTCGCTACGTCGACCAAGGAGGTGGCAAGCGC 49438 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA 255081 ||||| || |||||||||| ||||| ||||||||||| Sbjct 49437 AAGGGAGCCTTTGCCATCTACCTCGAGCCATGGCACGCCGA 49397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588050990477225