Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq1156 136 4e-27 seq256 134 1e-26 >seq1156 Length=71941 Score = 136 bits (150), Expect = 4e-27 Identities = 183/255 (72%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 58080 CGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGC 58139 |||| |||||||| || | ||||| ||| |||| ||||| |||||||||| |||| Sbjct 66681 CGCTGCAGCTGATCCGCGACAATGGCTGCAAATCGGGCCTGGTCTTCAACCCGGGCACGC 66622 Query 58140 CGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGA 58199 |||| || || || |||| |||||||| | || |||||||| | |||||||| | Sbjct 66621 CGCTGCACTACCTGGAACACGTGATGGACAAGATCGACATGATCCTGATCATGTCCGTCA 66562 Query 58200 ACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGC 58259 | || ||||||||||||||||| || || ||||| ||||| | || | ||||| || Sbjct 66561 ATCCGGGCTTCGGCGGCCAGTCCTTCATCCCGCAAGCGCTGAAGAAGATCGCCGAAGCGC 66502 Query 58260 GTCGCCGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGG 58319 | ||| || || | || || ||||| |||||||| || |||||| | ||| Sbjct 66501 GCCGCATGATCGACGAATCGGGCCGTGACATCATGCTGGAAGTCGATGGCGGCATCAAGA 66442 Query 58320 TGAACAATATCGGCG 58334 | |||| |||| || Sbjct 66441 TCGACAACATCGCCG 66427 >seq256 Length=183033 Score = 134 bits (148), Expect = 1e-26 Identities = 176/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 58102 CGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGT 58161 ||| || || ||||| ||||| ||||||||||| || ||||| || || || ||||| Sbjct 20283 CGGTTGCAAGGCGGGCCTGGTGTTCAACCCGGCCACTCCGCTGAGCGTGCTTGAGTACGT 20224 Query 58162 CATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTC 58221 ||||||||| | || || | |||||||| ||| ||||| ||||||||||| ||| Sbjct 20223 GATGGACAAAGTCGACATGGTGTTGCTGATGAGCGTCAACCCGGGCTTCGGCGGGCAGAA 20164 Query 58222 TTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGC-GTCGCCGCATTGATGCGTCCG 58280 || || || || || | || ||||| |||| || | ||| | || |||||||| | Sbjct 20163 GTTCATCCCCGGCACCCTTAACAAGCTGCGTGAAGCGCGGGCGCTG-ATCGATGCGTCGG 20105 Query 58281 GTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATCGGCGAGATCG 58340 | || || |||||||| | ||||| ||||| || || ||||| ||| |||| |||| Sbjct 20104 GCCGTGATATCCGCCTGGAGATCGACGGTGGCGTCAACGTCAACAACATCCGCGAAATCG 20045 Query 58341 C 58341 | Sbjct 20044 C 20044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471159103267400