Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_027994.1 Length=41632 Score E Sequences producing significant alignments: (Bits) Value seq215 116 1e-21 >seq215 Length=48791 Score = 116 bits (128), Expect = 1e-21 Identities = 609/953 (64%), Gaps = 28/953 (3%) Strand=Plus/Plus Query 6046 ATGTCTCTGTCAGATATGAAGGTTTATAACGACGATATCGTCGGTACCACTATCGAACTG 6105 ||||| ||||| | ||| |||||| ||||| | ||| | | ||| |||| | Sbjct 18400 ATGTCCCTGTCGCAAATGCAGGTTTTCAACGAATACATCATGCCAGCGACTCTCGAGACG 18459 Query 6106 CTTGGTCAGAAAACTGACCAGTTT-AACGCGGCCTCCGGTGGCGCAATTGTACTGTCTAC 6164 || | |||| | || || ||| ||||| || | |||||||||| || |||||| | Sbjct 18460 CTGGATCAGTAT-CTCGCCGCTTTCAACGCCGCAAGCCGTGGCGCAATCGTGCTGTCTCC 18518 Query 6165 TGCCTCATGGCGCGGTGATTTCTCCCGTGAGTCTTTCTTTAACCAGA---TTGCCTCCGC 6221 || | | ||||| ||| || ||||| ||||| ||||| | ||| | || Sbjct 18519 TGACGGCTTCACTGGTGACTTCCTCCAAGAGTCGTTCTT---CCAGACCTTGGCCGCTGC 18575 Query 6222 TAAACGCCGCGTTGACCGTTACGCCGCTATCGCGTCTCAGGCAGCTACCGCGCTGACTCA 6281 | |||||||| || || ||| | | | ||| || || || |||| |||||| | Sbjct 18576 CCAGCGCCGCGTGGATCGCTACAGCACGAACGCCGCTGTCGCTGCAACCGATCTGACTGA 18635 Query 6282 GGGCGAGCATGTAGGCGTTAAAGTCGCTGGCGGCTTCGGACCGGTACTGTTCGAGCCTGC 6341 | || || || || ||||| || |||||||| ||| | | | |||||| | Sbjct 18636 GCTGAAGAATACTTCGGTGAAGGTCGCCGGTGGCTTCGGTCCGATCCGCTACGAGCCATC 18695 Query 6342 GCAAATGACCTGGCTGAA-CGAAGACCCG-GCGAGCG--CGATTCGT-GCTATTTCCGAA 6396 ||| ||||| |||||| | || | ||| || || ||| || || | | || Sbjct 18696 GCAGATGACTTGGCTGGAGCGTCCAACCGCGCAAGGCATCGAA--GTCGCCAGTCGCGCG 18753 Query 6397 GGCTTCTCTGACGCACTGTTAGCGGACCAGCTTAACACCGCTGTTGGTGCCGCCGTTGCC 6456 ||| |||| ||| | ||||||||| ||||| || | | ||| |||||| Sbjct 18754 ---TTCGCTGAAATCCTGCTGAAGGACCAGCTGAACACAGCGATCGCCGCCCTGGTTGCC 18810 Query 6457 GCGGTATCAGGTCAGACTGCACTGGTTAACAATGTATCCGCGACCGCTGGCTTGTCCCTG 6516 ||| | | | ||| | || ||| ||| |||| || || ||||||||| | || Sbjct 18811 GCGATCACCGCCCAGGCCGCCGCGGTCAACGATGTGTCGGCTACCGCTGGCATCACCT-- 18868 Query 6517 AACG-TG--CTGAACAACAGCCACGCTAAATTCGGCGAC-CAGTCTCAGCTGCTGATTAC 6572 ||| || ||||||||| ||||| || ||||||||| || | ||| ||| | || Sbjct 18869 -ACGCTGGCCTGAACAACGCACACGCGAAGTTCGGCGACGCAAGC-CAGAACCTGGTCAC 18926 Query 6573 CGACATCATGACTGGTGCTGCTTATCACACGCTGGTAGATAAAGCGCTGACTAACGCAAA 6632 | | | ||| || | ||||||| | |||| | | ||| | ||| | Sbjct 18927 CCAGGTGATGCAGGGCACGAGCTATCACAAGTTGGTTGGCCAGAACCTGGCGAACCAGCA 18986 Query 6633 CCAGCTGTTCGTTGCCGGTAACGTTATGGTTGTCGATGTTCTCGGCAAGCGTTACGTAAT 6692 ||||||||| ||||| ||||| || || || ||||||||||| | ||| | Sbjct 18987 GCAGCTGTTCCAGGCCGGCAACGTCCGCGTGGTGGACATTCTCGGCAAGATCTCCGTTGT 19046 Query 6693 CTCTGACATTCCTGCGCTGTACGAGGCCGGTACTCCGAACAAGACTAAGGTCCTGTCCGT 6752 | || || |||||| || |||| || ||||||||| | |||||||| | Sbjct 19047 GACGGATGCCCCGGCGCTGATGCAGACCGGCACCCCGAACAAGGAAATCATCCTGTCCCT 19106 Query 6753 AGTTGCAAACGGCATCA-TCGTTGATAATGCTTCTGATATTATCAGCAACATTGATACCA 6811 || |||| || | ||||| | | | || || ||||||||| | | || Sbjct 19107 GGT-GCAAGGCGCTGCGCTCGTTCACGACGGCCGCGACATCATCAGCAACGTCCAGACTG 19165 Query 6812 GCAACGGTAACACCCGCATCCAGACCACCTGGCAGGCGGATTACAGCTTCGGCCTGAAAC 6871 |||||| || || ||| | ||||| ||| | || |||| |||||| || | Sbjct 19166 TCAACGGCAAGGAGCGTATCGAAACCACGCTGCAAACCGACTACACCTTCGGTTTGGGCC 19225 Query 6872 TGAAAGGCTATAGCTGGGATGTCGCCAACGGCGGTAAATCTCCGCTGGACGCAGAACTGT 6931 |||| ||||| | |||||| | ||| |||||| || || || ||||| |||||| Sbjct 19226 TGAAGGGCTACACCTGGGACACCACCACCGGCGGCAAGTCGCCTACCGACGCCGAACTGG 19285 Query 6932 TCACCGCGACCAACTGGGACAAAGCTGTTGCCGAGAGCAAACACACCCTCGGT 6984 |||| |||||||||||||| ||| || | ||| |||||| |||| Sbjct 19286 CGACCGGTACCAACTGGGACAAGACTGCCACCAGCATCAAGCACACCGCCGGT 19338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133078664089140