Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq1321 114 3e-21 seq685 104 6e-18 seq45 98.7 3e-16 >seq1321 Length=3862 Score = 114 bits (126), Expect = 3e-21 Identities = 135/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 41199 GGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCA-- 41256 ||||| ||||| ||| |||||||||| || | ||| ||||| || || || || ||| Sbjct 2634 GGCAATGATCCGGAAGTCCGTTACATCCCCAACGGGGGCGCAGTGGCAAACCT--GCAGG 2691 Query 41257 TCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAAT 41316 | |||||| | ||||||||| || ||| || || |||| | || || ||||||| Sbjct 2692 TGGCCACATCAGAAAGCTGGCGTGACAAACAGACGGGGGAGATGCGGGAGCAGACGGAAT 2751 Query 41317 GGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAG 41376 |||||||||| || | ||||| ||||| || ||| | ||| | ||||| |||||||| | Sbjct 2752 GGCACCGCGTGGTGCTGTTCGGCAAGCTCGCGGAAGTGGCTGGTGAATATCTGCGCAAGG 2811 Query 41377 G 41377 | Sbjct 2812 G 2812 >seq685 Length=77197 Score = 104 bits (114), Expect = 6e-18 Identities = 196/288 (68%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 41172 AACAAAGTAGAAATCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGC 41231 |||||||| || | |||||| ||| ||| || ||| |||| |||| || | | Sbjct 10563 AACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCCGAAC 10622 Query 41232 GGCGGCGCGGTTGCTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACC 41291 ||| ||| || | || ||| | | ||||| | ||||||||||| ||||| ||| Sbjct 10623 GGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCAGACC 10682 Query 41292 GGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAA 41351 ||| || || | || | || || ||||||||||| || ||||||| ||| | || ||| Sbjct 10683 GGCCAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATCGCCGAA 10742 Query 41352 ATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACG 41411 || || | || || ||||| ||||| ||| || | | | ||||||| || || || Sbjct 10743 ATCGCGGGTGAGTATCTGCGAAAAGGGAGCCAGTGCTACGTCGAAGGCACTCTCCGCACC 10802 Query 41412 CGTAAATGGCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAATC 41459 || | || ||| | | || || | ||||||||||| || ||| Sbjct 10803 CGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATC 10847 >seq45 Length=185997 Score = 98.7 bits (108), Expect = 3e-16 Identities = 181/262 (69%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 41199 GGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATC 41258 ||| | ||||| ||| | || ||| |||| | ||| ||| || | || || || | Sbjct 40075 GGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAACGCCGTGACCAACCTGAGTCTG 40134 Query 41259 GCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGG 41318 || || | ||| |||| || || |||||| ||||| || |||| |||||| Sbjct 40135 GCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAATGG 40194 Query 41319 CACCGCGTTGTC-ATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGG 41377 ||||| | |||| || ||||| ||| | ||||| || || | ||||||||||||||||| Sbjct 40195 CACCGTG-TGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGG 40253 Query 41378 TAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGT 41437 | |||| | ||| ||||||| |||| ||| || | || ||| | | ||| | Sbjct 40254 TTCGCAGGTCTACATCGAAGGCAAGCTGCAAACCCGCGAGTG---GGAAAAAGACGGCAT 40310 Query 41438 TGATCGCTACACCACTGAAATC 41459 | || ||||||||||||||| Sbjct 40311 CAAGCGTTACACCACTGAAATC 40332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133187445994680