Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq404 201 1e-46 seq98 129 7e-25 seq689 86.0 8e-12 seq371 82.4 1e-10 >seq404 Length=78127 Score = 201 bits (222), Expect = 1e-46 Identities = 595/904 (66%), Gaps = 30/904 (3%) Strand=Plus/Plus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||| |||| || ||||| || || || | ||||| || ||| || || | ||| Sbjct 48950 ACAAACTTGGGTAGGGCAATCGAGGCGAGGTTGCACACGGCCACTTCGTCGGGAGAGGTG 49009 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 || | | ||| ||||| || | |||||| | || || || || | ||||| |||||| Sbjct 49010 TATTGGACAATCTCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGTTT 49069 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 ||| ||||| || ||||||||||| || || || || || ||||| |||| || Sbjct 49070 GACTTGGCATTGCAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGCGAC 49129 Query 111401 TTGAGAATAGCCTTCCAAACATCGGCGGC-TGGTACAATGGCGTTG-GCCCGTC-CCTCC 111457 | || ||| | ||| | ||| ||| | | |||| ||| | ||| ||| Sbjct 49130 TCGATAATGGAGAACCAGAGATCTTGGGCCTTG----ATGGTCTTGCGACCGAGACCTGG 49185 Query 111458 G----CCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGAC 111512 | ||||||| |||||||| || ||||| || ||| | || || | ||||| Sbjct 49186 GGTGGCCTCGTAGCGGGTGTAGAGAGCGCGGAACTCGTCTCCC-CAGCAATCAGCGAGAC 49244 Query 111513 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACCCGCTTCAT 111570 |||| |||| || ||||| || || | ||| | | | || |||| || |||| ||| Sbjct 49245 CTGGGGCCTCGTTGGGACAAAAGAGTGTCCACT--CGGCGTTGGCCTCGACACGCTCCAT 49302 Query 111571 GAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACC 111630 || || || | | ||| |||| ||||||| || | || |||||| | || Sbjct 49303 AAAGAGATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCTTTCC 49362 Query 111631 TTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC 111690 ||||| || | |||||||||||||||| ||| |||||||||||||| || |||| Sbjct 49363 GTGGTTCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGGTAGAT 49422 Query 111691 TGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747 || | | |||||| || | || |||| | || ||||| || ||| |||| || Sbjct 49423 GGCAAAGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTCGTTGAA 49482 Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 111807 ||||||||||| |||| | ||| | ||| ||| || || || || || | || Sbjct 49483 CACGCGAAGCATGGGAACGAGACCGTTGGATGTACCGTTGGTGCCGCGGAT---ATATGA 49539 Query 111808 ATTGGC-TCTCACATCATGGATGTGCATC----CCAATACCCCCAGCCCACTTTGAGATT 111862 | ||| | | ||| || || || | ||||| || || ||| |||| ||||| Sbjct 49540 ACGGGCAGCGCGGATCTTG--TGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGATG 49597 Query 111863 TGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATA 111922 | || || | | | || || | |||||||| | ||| ||||| ||||| | || | Sbjct 49598 AGGGCGCATTGCTTGAGGGTATCGTAGATACCATCGATCGAGTCATCCTTCATCTGGACA 49657 Query 111923 AGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCG 111982 |||||||| ||||| || || || || | || ||||||||||| || ||| Sbjct 49658 AGGAAGCACGACGACATTTGTGGCGAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTGGCG 49717 Query 111983 TGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCC 112042 || | || | ||||| | || || || ||||| | | ||| |||||||| | Sbjct 49718 TGGGTAAAGTAGCGCTGGGAAAGCTGCTCATAGGTCTCGATGGCAGCGTCAATGTCGGCG 49777 Query 112043 CCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCA 112102 |||||||| || | | ||| ||||||| ||||| ||| || || |||| || | | Sbjct 49778 CCGTGGATACCAAGAGAGACACGCATGAGCATGTGCTGGGGACGCTCAATGATGACGTCG 49837 Query 112103 TCGA 112106 |||| Sbjct 49838 TCGA 49841 >seq98 Length=772300 Score = 129 bits (142), Expect = 7e-25 Identities = 961/1532 (63%), Gaps = 44/1532 (3%) Strand=Plus/Plus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 |||| || || ||||| ||||| ||||| || | |||| |||||| || || | |||| Sbjct 407701 GCCTGTGTACGCAGATAATACATTCCGGTTTTCAAACCTTTTTTCCAGGCATAGAAATGC 407760 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGG 110473 ||||||| || ||||| | |||| | || || ||||||| ||| ||| Sbjct 407761 ATAGAAGTCAGTTTGGATGTATTTGGTGCATTGATAAACAGGTTCAGGGATTGCGACTGG 407820 Query 110474 TCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCT--TCATCTTAATTTCCC 110531 ||| || || || | || |||||||||||| || || ||| |||||||||| Sbjct 407821 CAGATGTAGGCACCGCGGTCGGCTGCCATATCAATG--ATGCTGCGCATTTTAATTTCCC 407878 Query 110532 AAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAAC 110591 ||||||| || || | || |||| ||| || || || | || | ||| || |||| Sbjct 407879 AAACTGTTTTGTACAGTTCTTTAATATAATCCGGAATCTCGGCAATGTCCTGAATAGAAC 407938 Query 110592 CCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGT 110651 | |||| | || || ||||| | | ||| | || | | |||| Sbjct 407939 CGTTCGCCAGAATAATTCTGTCTTTCATCGCAGGTGTCCATAAGCCTAGGGCCACCAGGT 407998 Query 110652 CATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGA 110711 | || | | ||||||||| || | | |||||| || | ||||| || | Sbjct 407999 CTTTTAACAAGTGCTTGTTCACGACAATAAACTCTCCGCTCAATACCCTTCTGGTATAAA 408058 Query 110712 TGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTG 110771 |||||| ||||| || ||||| || ||||| || |||| ||| || | ||||| || | Sbjct 408059 TGTTTGAAGTGTAAGGCTCAAAACACTCATTGTTGCCCAGGATCTGAGAAGTGGAAGCCG 408118 Query 110772 TTGGCATTGGTGCCATCAAAAGACTGTTACGAAGAC-CCTTCTCCTTGA-TGCGTTCCTT 110829 |||||||||| |||| || || ||| | | || || | | |||| | | || || Sbjct 408119 TTGGCATTGGCGCCACCAGCAGGGAGTT--GTACACGCCGTTT--TTGACTACTTT--TT 408172 Query 110830 GA-GAA---CATCCCAGTC---GTAGTTG-AGCTTGGTTTCACCTTCCCACATGTCAAAC 110881 | | | |||||||| | |||| | ||||| || || ||| | ||||||| Sbjct 408173 CACGCAATGTTTCCCAGTCCCAGCGGTTGCTGTCTGGTTGTACATT-CCATAGGTCAAAC 408231 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 || | |||| ||| |||||||| | || || | || | ||| || || Sbjct 408232 TGGAATTTACCTTCTGACAATGGAGAACCTTTGAAAGTCTGGTAAGGACCATGTTTAACA 408291 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 |||| ||| ||| || || ||| ||| || |||||||| || ||| Sbjct 408292 GCCAGGTCATGTGAGGCCGTCATGGCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTT 408351 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAG 111060 | || || | || ||||||| ||| ||| || ||||| |||| || | Sbjct 408352 AAAATTTTTGCCCCTTCACTTTCAAATG-GTAAACGCATCAGGATAAAAGCATCTGCCAA 408410 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 111120 || || ||||| ||||||| |||||||| ||||| || || ||| || ||| || Sbjct 408411 TCCCTGTACACCTAAACCAACTGGTCTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTAC 408470 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| |||| ||||| | | || || || |||| | | || | || Sbjct 408471 CGGATAATAATTATGATCAATAATTTTATTCAGGTTCAGGGTAGCCTGATAGGTTACATC 408530 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC--TTCATTGACATACTTTGGAAGGGCG 111238 || | ||| | || ||||| | |||| || | ||||| | |||| | || Sbjct 408531 ATATAATTTCTGATGATCAA-------ACTCTCCGTTGA-TGACAAATCTTGGCAAAGCC 408582 Query 111239 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 111298 | || |||| || || ||||| ||| || || || ||||||| |||||||||| Sbjct 408583 AACGAGGCCAGGTTACATACAGCAACCTCGTCTTTGGAAGTATACTCTATAATTTCTGTA 408642 Query 111299 CATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCA 111358 || | ||||||||| || || || || ||||| | ||||| || |||| ||| Sbjct 408643 CAAAGGTTGGAACTTTTGATGGTTCCTAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCA 408702 Query 111359 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAA 111418 || || || | || || || || || || || ||||||| | ||||| || |||| Sbjct 408703 TCTTTATACAACAGATAAGGGGTTCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCAA 408762 Query 111419 ACATCGGCGGCTGGTACAATGGCGTT---GGCCCGTCCCTCCGCCTCGTACTTTGTGTAG 111475 | | | || | ||||| || ||| ||||| || ||||| || Sbjct 408763 AGCT---CTTGTGCTTTAATGGTTTTACGGGCACGTCCTTCTTTTTCGTAACGCTCATAT 408819 Query 111476 AGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 111535 | || || || || |||| | || | || || || || | | |||||||| Sbjct 408820 AAAGCATCGAATTCTGCACCAAAGCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAAT 408879 Query 111536 AGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGAT 111595 | | ||| | || ||| || |||| ||||||| ||||| | ||| |||| Sbjct 408880 AAACTCCAGTCTCCGTTTTCTTCTACCCTTCTCATGAACAGGTCACATACCCAAAGGGCA 408939 Query 111596 GAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 111655 | || | |||||| ||| ||||| | ||| ||||| || | || || || Sbjct 408940 TAGAATAAATCTCTGGCACGAAGTTCTTCTTTACCATGGTTTTTACGCAGGTCCAGAAAA 408999 Query 111656 TCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGC 111712 || | ||| || ||||||||||| || || | || | || || || || || Sbjct 409000 CTCAGCACATCTGCATGCCATGGCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCT 409059 Query 111713 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 111772 ||| | || | ||||| || || || |||||||||| | ||| || | ||| ||| Sbjct 409060 CCACCCTGGTCCACATAACGGGCGGTATCGTTAAATACTTTCAACATAGGTACAATCCCA 409119 Query 111773 TCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTG 111831 | || | | || ||||| || | |||| |||| |||| | | | ||||||| Sbjct 409120 T-TGCTGGTCCCGTTTGTTCCACCAATATAAGATCCCGTGGCACGGATGTTATGGATGCT 409178 Query 111832 CATCCCAATACCCCCAGCCCACTTTGAGATTT 111863 | |||||||| || || | | ||| |||| Sbjct 409179 TAAACCAATACCACCTGCGCTTTGTGAAATTT 409210 >seq689 Length=46727 Score = 86.0 bits (94), Expect = 8e-12 Identities = 191/286 (67%), Gaps = 3/286 (1%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| | ||| || || ||| || | || || || ||| | ||| Sbjct 18313 GGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAAACC 18254 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||| | || |||||||| | |||| | || | ||||| || ||||| ||||| Sbjct 18253 TGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTACCAGAGAAAAAGAT 18194 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAA 122837 |||||| || |||||||| | | || ||||| || || || |||| | Sbjct 18193 ACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGACTTGGAATTTG---AGAT 18137 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 |||| ||| |||||| | |||||||||| | |||||| | ||| | ||||| | || Sbjct 18136 CCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCATTGAA 18077 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAAT 122943 || | ||||||| | || |||||| ||| | || || ||| Sbjct 18076 CAAATTGGCCTTTTCAACTGGATTCTTAATATATGTATCGATTAAT 18031 >seq371 Length=37358 Score = 82.4 bits (90), Expect = 1e-10 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || ||||||||||| || ||||| | || |||| ||| ||||| || || | Sbjct 20364 CCGACGGCATCAATCTCGTCGATGAATATGATTGATGGAGCATTCTCGCGAGCCTCTTTA 20305 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 |||||||| || || | | ||| ||||| ||||||||||| | || | | || Sbjct 20304 AAGAGATCACGGACACGCGATGGACCAACACCGACAAACATCTCGATGAAATCCGATCCA 20245 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 ||| || ||| || || || ||||| || |||| |||||| | |||||| Sbjct 20244 GAGATGGTGAAGAAGGGCACGCCAGACTCACCAGCAGTGGCCTTGGCGAGCAAGGTCTTG 20185 Query 11804 CCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || || ||||| || | |||| ||| || ||||||||||||||| Sbjct 20184 CCAGTGCCTGGAGGGCCAACAAGAATGGCACCCTTGGGGATCTTGGCACC 20135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627922055148000