Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq404 206 3e-48 seq371 120 4e-22 seq377 111 2e-19 seq1565 102 1e-16 seq208 100 4e-16 >seq404 Length=78127 Score = 206 bits (228), Expect = 3e-48 Identities = 615/945 (65%), Gaps = 24/945 (3%) Strand=Plus/Plus Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 ||| |||| || ||||| || || || || || ||||| | || || | ||| Sbjct 48950 ACAAACTTGGGTAGGGCAATCGAGGCGAGGTTGCACACGGCCACTTCGTCGGGAGAGGTG 49009 Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 || | | ||| || ||||| | ||| || | || |||||||| | |||| ||| ||| Sbjct 49010 TATTGGACAATCTCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGTTT 49069 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 ||||| | || || || |||||||| || || ||||| || || ||||| | || ||| Sbjct 49070 GACTTGGCATTGCAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGCGAC 49129 Query 118875 TTGAGAATAGCCTTCCAGACATC---GGCAG-------CTGGC-ACAGTGGCGTTGGCTC 118923 | || ||| | ||||| ||| ||| || || || | | | | || | Sbjct 49130 TCGATAATGGAGAACCAGAGATCTTGGGCCTTGATGGTCTTGCGACCGAGACCTGGGGTG 49189 Query 118924 GCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 118983 ||| ||||| |||||||| || ||||| || ||| | || | || Sbjct 49190 GCC--------TCGTAGCGGGTGTAGAGAGCGCGGAACTCGTCTCCCCAGCAATCAGCGA 49241 Query 118984 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 119043 | ||||| |||| | || || ||||| | ||| | | |||| || |||| || Sbjct 49242 GACCTGGGGCCTCGTTGGGACAAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGCTCCA 49301 Query 119044 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 119103 | ||||| || | | |||||| || | ||||| || || || ||||| | | Sbjct 49302 TAAAGAGATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCTTTC 49361 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | || || || | || | || ||||||| ||| |||||||| || || ||||| | Sbjct 49362 CGTGGTTCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGGTAGA 49421 Query 119164 CCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 || | | ||||| || | ||| | |||| || || | |||||| |||| | Sbjct 49422 TGGCAAAGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTCGTTGA 49481 Query 119221 ATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACT 119280 | || |||||||| |||| || ||| | |||| || || || || || ||| || Sbjct 49482 ACACGCGAAGCATGGGAACGAGACCGTTGGATGTACCGTTGGTGCCGCGGATATATGAAC 49541 Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340 || | || | ||||| | |||||| || || ||| |||| ||||| | | Sbjct 49542 GGGCAGCGCGGATCTTGTGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGATGAGGG 49601 Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGG 119399 |||| | | |||| | ||||||| ||||||||||||||| |||| || || || ||| Sbjct 49602 CGCATTGCTTGAGGGTATCGTAGATACCATCGATCGAGTCATCCTTCATCTG-GACAAGG 49660 Query 119400 AAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459 ||||| ||||||||| ||| | || || | ||| ||||| ||||| || |||||| Sbjct 49661 AAGCACGACGACATTTGTGGCGAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTGGCGTGG 49720 Query 119460 ATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 119519 | || | ||||| | || || |||||||| | | | ||| |||||| | ||| Sbjct 49721 GTAAAGTAGCGCTGGGAAAGCTGCTCATAGGTCTCGATGGCAGCGTCAATGTCGGCGCCG 49780 Query 119520 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 119579 || ||||| | ||||| ||||| | ||||| ||||| || || | || | ||| Sbjct 49781 TGGATACCAAGAGAGACACGCATGAGCATGTGCTGGGGACGCTCAATGATGACGTCGTCG 49840 Query 119580 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAG 119624 | | || | ||| |||||||||||||| |||||| || Sbjct 49841 ATGCGGTGCAAGTAGGAACGCTCCAAGGTCTTGAAGCCAAAAAAG 49885 >seq371 Length=37358 Score = 120 bits (132), Expect = 4e-22 Identities = 278/413 (67%), Gaps = 7/413 (2%) Strand=Plus/Minus Query 14056 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 14115 ||||| ||||| || | ||| || || ||||| || | ||| || | ||| || || Sbjct 20542 GATCTGGCGATCGAATCTACCGGGCCGCAGGAGAGCATTGTCGAGTACATCGGGACGATT 20483 Query 14116 CGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAG 14175 || | || | ||||| | || | | || | || ||||||||||| |||||| Sbjct 20482 GGTACCGGCAAACACAACAACACCTTCGTTGCTACCGAATCCATCCATCTCTACCAAGAG 20423 Query 14176 TTGATTGATGGTTTGTTCGCGTTCATCATTC-GCAGGCATACCACCCGCACTGCGTTGCT 14234 |||||||| || | |||||||| ||||| | | || |||| | || | Sbjct 20422 TTGATTGAGTGTATTCTCGCGTTCGTCATTGTGGAAGCCG-CCACGGGATCTTGAACG-- 20366 Query 14235 TACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTT 14294 ||||||||| ||||| || |||||||| | ||| |||| ||| || || || ||| Sbjct 20365 -ACCGACGGCATCAATCTCGTCGATGAATATGATTGATGGAGCATTCTCGCGAGCCTCTT 20307 Query 14295 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 14354 ||||| ||| || || | | | ||| ||||| ||||||||||| | |||| | Sbjct 20306 TAAAGAGATCACGGACACGCGATGGACCAACACCGACAAACATCTCGATGAAATCCGATC 20247 Query 14355 CGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 | | | || | || |||||| ||| ||| ||||| || |||| |||||| | |||| Sbjct 20246 CAG-AGATGGTGAAGAAGGGCACGCCAGACTCACCAGCAGTGGCCTTGGCGAGCAAGGTC 20188 Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || || ||||| || | |||| |||||| |||||| ||||||| Sbjct 20187 TTGCCAGTGCCTGGAGGGCCAACAAGAATGGCACCCTTGGGGATCTTGGCACC 20135 >seq377 Length=20736 Score = 111 bits (122), Expect = 2e-19 Identities = 282/420 (67%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 14014 CAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCG 14073 ||| |||| ||||| ||||| | | ||| | | |||| | || || || || || Sbjct 15175 CAAGATCTGTTCGCGGCCGCGGATATCGGGCAAGCCGACGGACACCTGGCGGTCGAAACG 15116 Query 14074 ACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAAC 14133 || || || || || || | ||| || | || |||||| ||||| || | ||| | Sbjct 15115 GCCCGGACGCAGCAGCGCCTTGTCGAGCACGTCGGCGCGGTTGGTCGCGGCCACGACGAT 15056 Query 14134 GATGCCCGTCT-CGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTT 14192 || ||| | | || | ||||| || |||||||| || | || || | ||| |||| Sbjct 15055 GACGCCGGAGTTCGCT-TCAAAACCGTCCATCTCGACCAGCAACTGGTTCAGGGTCTGTT 14997 Query 14193 CGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAAT 14250 |||| || ||||| | || ||| || |||| ||| || ||||| ||||| || Sbjct 14996 CGCGCTCGTCATTGCC--GCCGCCCATGCCGGCACCGCGGTGGCGGCCGACAGCGTCGAT 14939 Query 14251 TTCATCGATGAAAACGATACATGGTTGAT--TTTCACGGGCAACTTCAAAGATATCTCGC 14308 ||||||||||||| ||| || || || ||| | || ||| || || || || Sbjct 14938 CTCATCGATGAAAATGATGCACGGCGAATGCTTTTTC--GCGTTTTCGAACATGTCGCGG 14881 Query 14309 ACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GAT 14367 || | |||| || || || || ||||| ||||| || | || ||||| || | || Sbjct 14880 ACACGGCTGGCGCCCACGCCGACGAACATTTCCACGAAGTCGGAACCGGAA-ATCGAGAA 14822 Query 14368 GAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||| || || || | ||| || |||||||| || || || ||||| || ||||| || || Sbjct 14821 GAACGGCACCTTGGCTTCGCCGGCGATGGCGCGCGCCAGCAGGGTTTTACCCGTGCCCGG 14762 >seq1565 Length=26367 Score = 102 bits (112), Expect = 1e-16 Identities = 254/378 (67%), Gaps = 16/378 (4%) Strand=Plus/Minus Query 179737 AGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCA 179796 |||||||||||||| |||| ||||| | ||||| || |||||||| ||||| |||||| Sbjct 8016 AGGAGCGATGGCCAAAAGTGATGGATGAGATTGATGAGCAGACCCTTGATGTGGGAACCA 7957 Query 179797 TCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAG---CTCGGAAACATCT 179853 |||| ||| ||| ||||||||||| | |||| || || || || | || || Sbjct 7956 TCGTGATCTTGATCAGTCATAATCATCAAATGACCGTATCGCAGAGACTTG---ACGTCG 7900 Query 179854 TGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTG---AACTCTTGG 179910 | || ||||| ||||| || ||| || | |||| | ||| | ||||| | Sbjct 7899 TCGTATTCCTTCTTGTGTTGCAGTCCC---ATAATGTTGACAATGTTGGTAATCTCTTCG 7843 Query 179911 TTTG-ATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGG 179969 || | | || | ||| || | ||| || ||||| || || | || || Sbjct 7842 TTGGCCAGCAAGATACGCATCT-CTGTATCACGCACATTCAATGGTTTACCTCTAAGTGG 7784 Query 179970 GAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGC 180029 ||| || ||||| ||||| ||||| | || | ||| || || || ||||| || Sbjct 7783 GAAGCATCCATAGTGGTCACGTCCAACGATCGATATACCGGCGGTGGCCAGTGTCTTGGC 7724 Query 180030 GGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TTGTGCCGTCCCTGCCTTGT 180088 ||||| ||||| || | |||||||| || | |||| |||| || || || |||| Sbjct 7723 CGAATCTCCCTCTGTTAGAATGAGCGTGCAGTCCTCAGACTTGT-TGGTTCCGGCATTGT 7665 Query 180089 TCGCGTCGTCCAACTTGG 180106 | |||||||| | ||||| Sbjct 7664 TGGCGTCGTCGAGCTTGG 7647 >seq208 Length=140336 Score = 100 bits (110), Expect = 4e-16 Identities = 256/380 (67%), Gaps = 16/380 (4%) Strand=Plus/Minus Query 14056 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 14115 || || ||| ||||| || || || || || | ||| ||| || | || ||||| Sbjct 87628 GACCTGACGGTCAAAACGGCCCGGACGCAGCAACGCGGGGTCGAGTACGTCTGGACGGTT 87569 Query 14116 CGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAG 14173 || || ||||| || | |||||| ||| || || |||||||| ||||||||| || Sbjct 87568 GGTTGCAGCGATCACGATGATGCC-GTCGTTCATT-TCAAAGCCGTCCATCTCAACCAGC 87511 Query 14174 AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTT 14231 | || || | || || || || ||||||| | || ||| || || | || | Sbjct 87510 AACTGGTTAAGCGTCTGCTCACGCTCATCATGACC--GCCGCCCATGCCGGCGCCACGAT 87453 Query 14232 GCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG---TTGATTTTCACGGG 14288 | ||| |||||||| |||||||||||||| | ||| || || || || | || Sbjct 87452 GGCGACCAACGGCGTCGATTTCATCGATGAAGATGATGCACGGAGCGTGCTTCT---TGG 87396 Query 14289 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 | ||| || ||||| || || | ||||||| ||||| |||||||| || || || | Sbjct 87395 CCTGTTCGAACATATCGCGAACACGGCTGGCACCTACACCGACAAACATTTCGACGAAGT 87336 Query 14349 TGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGG 14407 || ||||| || | || ||| || || || | ||| || || ||||| ||| | Sbjct 87335 CGGAACCGGAA-ATGGTGAAGAAAGGTACTTTGGCTTCGCCGGCAATGGCCTTGGCCAAC 87277 Query 14408 AGGGTCTTCCCCGTCCCTGG 14427 ||||| || || || ||||| Sbjct 87276 AGGGTTTTACCGGTACCTGG 87257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618326935187800