Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq404 232 8e-56 seq371 120 4e-22 seq689 95.1 1e-14 seq47 93.3 5e-14 seq531 89.7 6e-13 seq104 84.2 3e-11 >seq404 Length=78127 Score = 232 bits (256), Expect = 8e-56 Identities = 900/1392 (65%), Gaps = 68/1392 (5%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || | | ||||| || || | |||||||| ||| | Sbjct 49818 CCCCAGCACATGCTCATGCGTGTCTCTCTTGGTATCCACGGCGCCGACATTGACGCTGCC 49759 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| || || || | ||||| | || | ||||| || ||||||||||| Sbjct 49758 ATCGAGACCTATGAGCAGCTTTCCCAGCGCTACTTTACCCACGCCACCCCAACCCTCTTT 49699 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || | || || || |||||||| ||||||||| || | ||||| ||| Sbjct 49698 AACTCGGGCACCTGCTCGCCACAAATGTCGTCGTGCTTCCTTGTCCAGATGAAGGATGAC 49639 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | |||||||| | || || | | | || || | ||||| |||| ||| || Sbjct 49638 TCGATCGATGGTATCTACGATACCCTCAAGCAATGCGCCCTCATCTCCAAGTCGGCCGGA 49579 Query 104462 GGTATTGG----GATGCACATCCATGATGTGAGA-GCCAATAAATCTCGTATTCGGGGGA 104516 || ||||| | || || || ||| | | ||| | || | || || || | Sbjct 49578 GGCATTGGTCTCGCTGTCCA--CAAGATCCGCGCTGCCCGTTCATAT---ATCCGCGGCA 49524 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || ||| ||| | ||| | |||| ||||||||||| || |||| ||| || |||| Sbjct 49523 CCAACGGTACATCCAACGGTCTCGTTCCCATGCTTCGCGTGTTCAACGACACTGCTCGCT 49464 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | || | |||| || | || |||||| | | || |||| || |||||||||| Sbjct 49463 ACGTCGACCAAGGAGGTGGCAAGCGCAAGGGAGCCTTTGCCATCTACCTCGAGCCATGGC 49404 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| |||||||||||||||| | || ||||| || | || ||| ||| Sbjct 49403 ACGCCGATGTCATGGAGTTCCTTGACCTTCGCAAGAACCACGGAAAGGAAGAGATGCGTG 49344 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| || ||||| | ||| |||||| | | |||||||| ||| || | || |||| | Sbjct 49343 CCCGTGACCTCTTTTACGCCCTCTGGGTATCCGATCTCTTTATGGAGCGTGTCGAGGCCA 49284 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 | | | ||| | ||||||||||| || |||| || |||||| | ||| | ||| | Sbjct 49283 ACGCCGAGTGGACACTCTTTTGTCCCAACGAGGCCCCAGGTCTCGCTGATTGCTGGGGAG 49224 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGG---AAGAAGG--TCGGGCGACTGCGAC 104868 | ||||| || || ||||| ||||||| ||| |||| || ||| Sbjct 49223 ACGAGTTCCGCGCTCTCTACACCCGCTACGAGGCCACCCCAGGTCTCGGTCG--CAAGAC 49166 Query 104869 GGTGCCAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 | | || ||| ||| | ||| | ||| || |||| || | |||||||| || Sbjct 49165 CAT-CAAG--GCCCAAGATCTCTGGTTCTCCATTATCGAGTCGCAGATTGAGACTGGCAC 49109 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 ||||| || || ||||| |||||||| || ||| || ||| ||||| | || Sbjct 49108 CCCATATATCCTCTACAAGGACGCCTGCAATGCCAAGTCAAACCAACAGAATCTCGGCAC 49049 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 ||| || | ||||| ||||| ||||| || | ||| || || || ||| Sbjct 49048 CATCCAGTGCTCCAACCTCTGCACAGAGATTGTCCAATACACCTCTCCCGACGAAGTGGC 48989 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA---- 105101 ||||| |||||||| || || || || ||||||| ||| | || || ||| || Sbjct 48988 CGTGTGCAACCTCGCCTCGATTGCCCTACCCAAGTTTGTTGTGCC--AGCCAAGGATGGC 48931 Query 105102 ---------CA-TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAAC 105151 || ||| | | || | ||| ||| | || | |||| ||| Sbjct 48930 GTTCCCGCCCACTTTAACCACCAACATCTCTTTGAAATGACCTGTATCATCACTCGCAAC 48871 Query 105152 CTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATG 105211 || ||| | | ||||| | || | ||||| ||| | || |||| || || ||| Sbjct 48870 CTCAACCGCATCATTGACCGCAACTACTACCCTGTTCAAGAGGCCCGTACCTCCAACATG 48811 Query 105212 AGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGC 105271 | || |||||||| ||| ||||| | || |||||||| || | ||||| |||| Sbjct 48810 CGTCATCGTCCAATCGGTATCGGTATCCAAGGTCTCGCCGACG-------TCTTTATCGC 48758 Query 105272 CACGCATTTG--ATTC----CGACGAAGCGAAGGAAATC-AATGCGCGCATATT--TGAG 105322 || || | || |||| |||| || | || | | |||| | ||| ||| Sbjct 48757 CATGCGTATGCCATTCGATTCGAC-TGCCGCTGCCAACCTTAACCGCG-AGATTGCCGAG 48700 Query 105323 ACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATAT 105382 ||||| ||| ||| || || || | ||| | || | || ||||| ||| Sbjct 48699 ACCATCTATTTCGCTGCCCTCACTGCCTCTAACGAGATTGCCGTCAAGGAGGGTCCCTAT 48640 Query 105383 GAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAG 105440 |||||||| || ||| || || |||||| | |||||| |||||||||| Sbjct 48639 GAAACCTTCCCAGGAAGTCCCGC--CAGCAAGGGAATCCTTCAACCAGATATGTGGG-GT 48583 Query 105441 GTGAGACCAAGCTTCAC--TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGG 105498 || | |||| || ||| | |||||| | ||||||| || ||| | | || Sbjct 48582 GTCACACCAGGC-CCACGTTGGGACTGGACTGGACTCAAGGCCCGTATCGTTGCCACTGG 48524 Query 105499 TCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 105558 |||||||| ||| ||| | |||||||||||||| ||||| || | |||||| | || Sbjct 48523 AATTCGTAACTCTCTTCTCGTTGCTCCAATGCCAACTGCCTCTACTTCTCAAATCCTTGG 48464 Query 105559 TAATAATGAATG 105570 |||||||||||| Sbjct 48463 TAATAATGAATG 48452 >seq371 Length=37358 Score = 120 bits (132), Expect = 4e-22 Identities = 282/419 (67%), Gaps = 19/419 (5%) Strand=Plus/Minus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||||| ||||| || | ||| || || ||||| || | || || | ||| ||||| Sbjct 20542 GATCTGGCGATCGAATCTACCGGGCCGCAGGAGAGCATTGTCGAGTACATCGGGACGATT 20483 Query 9577 CGTCGCGGCGATGACAACAATACCT--GTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || |||| | ||||||| |||| ||| | || | || |||||||||||| ||| Sbjct 20482 GGTACCGGCAAACACAACAACACCTTCGTTGC--TACCGAATCCATCCATCTCTACCAAG 20425 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 9694 ||||| || | || | || ||||| ||||| ||| | || ||| | | | Sbjct 20424 AGTTGATTGAGTGTATTCTCGCGTTCGTCATTG--TGGAAG----CCGCCACGGGAT--C 20373 Query 9695 TTT-----CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG 9749 || || |||||||||||||| || ||||| | ||| |||| ||| ||||||| Sbjct 20372 TTGAACGACCGACGGCATCAATCTCGTCGATGAATATGATTGATGGAGCATTCTCGCGAG 20313 Query 9750 CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9809 | ||| ||||||||| || |||||| | || ||||| ||||||||||| | || | Sbjct 20312 CCTCTTTAAAGAGATCACGGACACGCGATGGACCAACACCGACAAACATCTCGATGAAAT 20253 Query 9810 TTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 9868 | | | | || | || |||||| || ||| ||||| ||| |||| |||||| Sbjct 20252 CCGATCCAG-AGATGGTGAAGAAGGGCACGCCAGACTCACCAGCAGTGGCCTTGGCGAGC 20194 Query 9869 AGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 | ||||| || || ||||| || | || | |||||| || |||||||| || Sbjct 20193 AAGGTCTTGCCAGTGCCTGGAGGGCCAACAAGAATGGCACCCTTGGGGATCTTGGCACC 20135 >seq689 Length=46727 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 ||||| | || |||| ||| | | ||||| || || ||||| ||| ||| | Sbjct 18083 GCCATAGAGACTATTCCATGTGTCAAGAAGAAGGCTGACTGGGCATTGAGATGGATCT-- 18140 Query 94783 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 94842 |||| || || ||||| ||||| | | || ||||| || ||||||||||| Sbjct 18141 -CAAATTCCAAGTCGTTTGCCGAGCGTTTGGTGGCGTTTGCAGCCGTCGAGGGTATCTTT 18199 Query 94843 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 94902 ||||||||| ||||| | || | ||||||||||||||| || | ||||||||| | Sbjct 18200 TTCTCTGGTAGTTTCTGTTCAATCTTTTGGCTCAAGAAGCGTGGATTGATGCCAGGTTTG 18259 Query 94903 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||||||||| | ||| |||||||| || | ||| || ||||| Sbjct 18260 ACCTTTTCCAACGAGTTGATCAGCCGTGACGAAGGTTTGCACTGCGACTTTGC 18312 >seq47 Length=36934 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 9707 TCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCC 9766 |||||||| |||||||| | ||| |||||| || | |||||| |||||||| || Sbjct 33505 TCAATCTCGTCAATGAATATGATACATGGTGCGTTCTTGCGAGCAGTCTCAAAGAGCTCG 33446 Query 9767 CGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 || |||||||||||||| ||||| ||||||||||| |||| Sbjct 33445 CGGACACGCTTGGCGCCGACACCGACAAACATCTCTTCAAA 33405 >seq531 Length=89189 Score = 89.7 bits (98), Expect = 6e-13 Identities = 179/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734 ||||| | |||||||| ||| ||| |||| || | || | || || | ||| Sbjct 88149 ATAGATACATATATTAAAGATACATTTGAAAAGACCAAGTTATTCAATGCTATAGAGACA 88090 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA-AAGTCGCG 94793 |||| ||| | ||||||| || ||||||||| | | ||| |||| | || || Sbjct 88089 ATTCCATGTGTCAAAAAGAAGGCTGATTGGGCTCT----TCGTTGGATAAACAACTCTGC 88034 Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 || ||||| ||| |||| | |||||||| || || |||||||| |||||||| Sbjct 88033 ATCGTTTGCAGAGAGACTGGTGGCATTTGCAGCAGTCGAAGGTATCTTTTTCTCTGGAAG 87974 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 ||||| | || | ||||||||||| || || | ||||| ||||| | ||| || Sbjct 87973 TTTCTGTTCGATATTCTGGCTCAAGAAACGTGGCTTGATGCCTGGTCTGGCCCACTCGAA 87914 Query 94914 CGAGCTTATCTCTCGTGACGAGGG 94937 |||| |||| ||| || || || Sbjct 87913 CGAGTATATCAGTCGCGATGAAGG 87890 >seq104 Length=86770 Score = 84.2 bits (92), Expect = 3e-11 Identities = 206/304 (68%), Gaps = 15/304 (5%) Strand=Plus/Minus Query 9518 ATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 9577 |||| ||||| || ||||| || | | || || | || |||||||| || || Sbjct 31690 ATCTGTCGATCGAAACGACCGGGTCTCAATAGAGCTTGGTCGAGGATATCTGGACGGTTT 31631 Query 9578 GTCGCGGCGATGACAACAATACCTGTTTCATT--ATCAAAACCATCCATCTCTGTCAAAA 9635 || ||||| | || |||| | | || | | | |||||||||||||||| | | Sbjct 31630 GTGGCGGCAAGTACTACAA--CGTTCTTGAGTGGAGTAAAACCATCCATCTCTACGAGCA 31573 Query 9636 GTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG----GCATACCACCAGCACTGCGT 9691 ||||| | ||| | || || |||||||||| | | || ||||| | | | Sbjct 31572 ACTGGTTGAGAGTGTTCTCACGCTCATCATTCGATCCACTGAAT-CCACCTTTTCCTC-T 31515 Query 9692 TGCT-TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC 9750 |||| |||| | ||| |||||||| || || || || ||||||||| | | | | || Sbjct 31514 TGCTCTTCCAATGGCGTCAATCTCGTCGATAAACACAATGCATGGTGCACTCTTTCTTGC 31455 Query 9751 GACTTCAAAGAGATCCCGTACAC--GCTTGGCGCCCACACCAACAAACATCTCCACAAAG 9808 |||||||||||| ||||| | ||| | | | || |||||||||||||| |||||| Sbjct 31454 CTGTTCAAAGAGATCACGTACTCTAGCTGGTC--CAACTCCAACAAACATCTCTACAAAG 31397 Query 9809 TTTG 9812 | || Sbjct 31396 TCTG 31393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583158692906200