Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq404 295 7e-75 seq98 136 4e-27 seq4259 102 9e-17 >seq404 Length=78127 Score = 295 bits (326), Expect = 7e-75 Identities = 710/1063 (67%), Gaps = 31/1063 (3%) Strand=Plus/Plus Query 78865 ATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTC 78924 || ||||| ||||| || || |||| |||||| |||| || || || ||||||||| Sbjct 48761 ATAAAGACGTCGGCGAGACCTTGGATACCGATACCGATTGGACGATGACGCATGTTGGAG 48820 Query 78925 TTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTG 78984 | |||||| | | ||||| |||| || || |||| |||||| ||||| || ||| Sbjct 48821 GTACGGGCCTCTTGAACAGGGTAGTAGTTGCGGTCAATGATGCGGTTGAGGTTGCGAGTG 48880 Query 78985 ACGACCCGAGTCACCTCGTACA-AT-TTGGCG----AAATCAA----AATGATTTCCTTT 79034 | || | |||| || | | || |||| | || | || | ||||| Sbjct 48881 ATGATACAGGTCATTTCAAAGAGATGTTGGTGGTTAAAGTGGGCGGGAACGCCATCCTTG 48940 Query 79035 GATG--------AAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCC 79086 | || || | |||||| | ||| || ||||||||||||||| ||||| Sbjct 48941 GCTGGCACAACAAACTTGGGTAGGGCAATCGAGGCGAGGTTGCACACGGCCACTTCGTCG 49000 Query 79087 GGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTC 79146 || | | || || |||||||| | || || ||| ||||||||||| ||| Sbjct 49001 GGAGAGGTGTATTGGACAATCTCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTC 49060 Query 79147 TTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCA 79206 | ||||| ||| | || ||||||||||||||| || || || || || |||||| Sbjct 49061 TGTTGGTTTGACTTGGCATTGCAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCA 49120 Query 79207 ACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGT-ACCG 79265 | ||| || || || | | ||||| || ||||| || ||||| |||| Sbjct 49121 ATCTGCGACTCGATAATGGAGAACCAGAGATCTTGGGCCTTGATGG---TCTTGCGACCG 49177 Query 79266 AC-CCTGTG----CGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCG 79320 | |||| | | |||| ||| | || ||| | || || || ||| Sbjct 49178 AGACCTGGGGTGGCCTCGTAGCGGGTGTAGAGAGCGCGGAACTCGTCTCCCCAGCAATCA 49237 Query 79321 GGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTC 79380 | || || ||| ||||| || || | || ||| || ||| ||| || | Sbjct 49238 GCGAGACCTGGGGCCTCGTTGGGACAAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGC 49297 Query 79381 TCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCG 79440 ||||| ||||| || | | ||| ||||| |||||||| ||| ||||||||| || Sbjct 49298 TCCATAAAGAGATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCC 49357 Query 79441 TCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGA 79500 | || |||||| || || || || || ||||||| ||||||||||| ||||| || Sbjct 49358 TTTCCGTGGTTCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGG 49417 Query 79501 TAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTG 79560 |||||||| || | |||||||||||||| || || |||| |||||| || || |||| | Sbjct 49418 TAGATGGCAAAGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTCG 49477 Query 79561 TTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGT 79620 ||||| || || |||||||| |||| |||| || ||||| || ||| ||| | Sbjct 49478 TTGAACACGCGAAGCATGGGAACGAGACCGTTGGATGTACCGTTGGTGCCGCGGATATAT 49537 Query 79621 GTACCGCTCGCCCGAATGTT-CGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGAT 79679 | || | || || || || | ||| || || ||||| |||| | |||||||||| Sbjct 49538 GAACGGGCAGCGCGGATCTTGTGGACAG-CGAGACCAATGCCTCCGGCCGACTTGGAGAT 49596 Query 79680 GTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGAC 79739 | | ||||| | |||||| || |||||||| || ||||||||||| |||||||| ||| Sbjct 49597 GAGGGCGCATTGCTTGAGGGTATCGTAGATACCATCGATCGAGTCATCCTTCATCTGGAC 49656 Query 79740 CAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGC 79799 |||||||| |||||| ||||| | || || | ||| |||||||| || || || Sbjct 49657 AAGGAAGCACGACGACATTTGTGGCGAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTGGC 49716 Query 79800 GTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGAC-GCGCGGGAGGTCGT 79858 ||| || ||| | ||| | | | || || ||||| || | ||| | |||| Sbjct 49717 GTGGGTAAAGTAGCGCTGGGAAAGCTGCTCATAGGTCTCGATGGCAGCG-TCAATGTCGG 49775 Query 79859 CGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG 79901 |||||||||| || | | ||| ||||||| | || |||||| Sbjct 49776 CGCCGTGGATACCAAGAGAGACACGCATGAGCATGTGCTGGGG 49818 Score = 219 bits (242), Expect = 5e-52 Identities = 537/805 (67%), Gaps = 13/805 (2%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCC-CGCGAGT 19161 || ||| || | ||||||| ||| | | || ||||| |||| |||| | ||| | Sbjct 49818 CCCCAGCACATGCTCATGCGTGTCTCTCTTGGTATCCACGGCGCCGACATTGACGCT-GC 49760 Query 19162 CCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTT 19221 | |||||| || || | | | |||| | ||| || ||||| || || ||||| || Sbjct 49759 CATCGAGACCTATGAGCAGCTTTCCCAGCGCTACTTTACCCACGCCACCCCAACCCTCTT 49700 Query 19222 CAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGA 19281 ||| | || || | || || |||||| || ||||| || ||||||||||| Sbjct 49699 TAACTCGGGCACCTGCTCGCCACAAATGTCGTCGTGCTTCCTTGTCCAGATGAAGGATGA 49640 Query 19282 CAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGG 19341 | || || || |||||||| || |||||| | ||||| | ||||||||||| | |||| Sbjct 49639 CTCGATCGATGGTATCTACGATACCCTCAAGCAATGCGCCCTCATCTCCAAGTCGGCCGG 49580 Query 19342 GGGTATCGGGATCCACTGCTCG-AATATCCGGTCGAGTGGTACACGAATCAATGGGACGA 19400 || || || || ||| | || ||||| | || || ||| || || | Sbjct 49579 AGGCATTGGTCTCG-CTGTCCACAAGATCCGCGCTGCCCGTTCATATATCCGCGGCACCA 49521 Query 19401 ACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 |||| | || ||||| |||| || ||||| ||||| |||||| |||| || | |||| Sbjct 49520 ACGGTACATCCAACGGTCTCGTTCCCATGCTTCGCGTGTTCAACGACACTGCTCGCTACG 49461 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 || |||| || || ||||| |||||||| | || ||||||||||||||||||||||||| Sbjct 49460 TCGACCAAGGAGGTGGCAAGCGCAAGGGAGCCTTTGCCATCTACCTCGAGCCATGGCACG 49401 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 | || |||||||| ||||| || || ||| |||||| || | || |||||||| | Sbjct 49400 CCGATGTCATGGAGTTCCTTGACCTTCGCAAGAACCACGGAAAGGAAGAGATGCGTGCCC 49341 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 | |||||||| ||| | ||| | | || || || |||||| || ||| ||| Sbjct 49340 GTGACCTCTTTTACGCCCTCTGGGTATCCGATCTCTTTATGGAGCGTGTCGAGGCCAACG 49281 Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700 || ||| || | || || |||| ||| || || | || || || || | Sbjct 49280 CCGAGTGGACACTCTTTTGTCCCAACGAGGCCCCAGGTCTCGCTGATTGCTGGGGAGACG 49221 Query 19701 CGTTCAATGAGTTGTACCGGACTTACG----TAGCCCAGGGC-CGGT-TCAAGAAGGTGG 19754 |||| | | ||| |||| | |||||| | |||| ||||| Sbjct 49220 AGTTCCGCGCTCTCTACACCCGCTACGAGGCCACCCCAGGTCTCGGTCGCAAGA---CCA 49164 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 || ||||| || ||||| | | | || | ||| | ||||| ||||| || | Sbjct 49163 TCAAGGCCCAAGATCTCTGGTTCTCCATTATCGAGTCGCAGATTGAGACTGGCACCCCAT 49104 Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874 | || ||||||||||||| || ||||||||||| || |||| ||||| | ||| Sbjct 49103 ATATCCTCTACAAGGACGCCTGCAATGCCAAGTCAAACCAACAGAATCTCGGCACCATCC 49044 Query 19875 AGTCGTCCAACCTGTGTACTGAAAT 19899 ||| |||||||| || || || || Sbjct 49043 AGTGCTCCAACCTCTGCACAGAGAT 49019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 || || |||||||||||||| || ||||| | ||||||||||| ||| | |||||| Sbjct 48001 CGAGTGCGCAAATAGTACATTCCAGTCTTCAATCCCTTCTTCCACGAGTAAAAGTGCATC 48060 Query 78247 CTCGACAGCTTGGCCAGACTCGGGTTC-TCCATGAAGATGTTGAGCGACTGGGACTGGTC 78305 | || ||||| || || || || | ||||| | ||||| |||| || || Sbjct 48061 GAGGTCAACTTGG-CAAACGATGGCTCAGCAATGAAAACGTTGAAGCTCTGGCTTTGATC 48119 Query 78306 GATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGAT 78365 ||||| ||||| |||||||| ||||| ||||| | | ||| |||||||||| | Sbjct 48120 AATGTAGGCACCACGGTCGGCAGCCATATCGATAAGTGTACGTTGACGAATCTCCCAAAC 48179 Query 78366 GGTCCGGTAAATGGCCTTCA 78385 ||| ||| | |||||| Sbjct 48180 AGTCTTGTAGAGCTCCTTCA 48199 >seq98 Length=772300 Score = 136 bits (150), Expect = 4e-27 Identities = 343/517 (66%), Gaps = 7/517 (1%) Strand=Plus/Minus Query 59616 TTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAAT 59675 |||||| ||| || || |||||||| | | |||| |||| | |||||||| || || Sbjct 410907 TTCTGGACCGCTGAAGAAATTGACCTTTCTGATGACCAGAAGCACTGGGACAA-CTTAAA 410849 Query 59676 TAC-GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAAT 59734 ||| | ||||| |||||||| | || || || || || || ||||| || || Sbjct 410848 TACAGGCGAGCGTCATTTCATTTCTCATATACTTGCTTTTTTTGCTGCAAGTGACGGCAT 410789 Query 59735 TGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTC 59794 ||| | ||||| | | ||||||| | || || ||| || |||| ||||| | Sbjct 410788 TGTAAATGAAAACCTTGCAGTGAACTTCATGAGCGAAGTACAGCTTCCCGAAGCCCGTTG 410729 Query 59795 GTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 || || | | ||| | | || |||||||| || || || |||| |||| Sbjct 410728 TTTTTATGGCTTCCAGATCATGATGGAAAACATCCACTCTGAAACCTATGCGCTGCTGAT 410669 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||||| | | || ||||| ||||| || | | ||||||| |||| |||||||| Sbjct 410668 CGATACCTATATTAAAGATCCTGAAGAAAAAGACAGGCTGTTCCATGCCGTAGAGACGGT 410609 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGA-TGAGTCCTGGAGCATCAT 59973 || || || |||||||||||||||| ||| |||| |||| || | | | Sbjct 410608 TCCTTGTGTAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAG----GGCGGAAATT 410553 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 |||| ||||| | | ||||| || |||||||| || |||||| || |||| Sbjct 410552 TTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCT 410493 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 || | || |||||| | ||||| | ||||| ||||| || || | || || ||| Sbjct 410492 GTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAATGAGT 410433 Query 60094 TGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 |||||||| | || ||||| | ||| || ||||| Sbjct 410432 TGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGC 410396 >seq4259 Length=4273 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 166343 GTCATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGACAACGCCTGGATT 166402 ||||||||| || ||| || || |||||||| || |||||| || || |||||| || Sbjct 4046 GTCATCGAGGTCGCTCCGCTCGCCTACATGCGTGGCCGGACGCTCAACGACGCCTTCATC 3987 Query 166403 ATCGGGGATGAGATGCAGAACTCGACGCCGGGTCAGATGAAGATGCTTCTGACCCGGATC 166462 ||| ||| || ||||||| | ||| | | |||||||||||| | |||||||| || Sbjct 3986 ATCTTGGACGAAGCGCAGAACACCACGGCCGAGCAGATGAAGATGTTCCTGACCCGCCTC 3927 Query 166463 GGGGAAGGTTCGAAGATGATCGTCGCGGGTGACACGGCCCAGCACGATC 166511 ||| ||||| ||||| | ||| | || ||| | ||||| ||||| Sbjct 3926 GGGTTCGGTTCCAAGATCGTGGTCACCGGAGACGTGACCCAGGTCGATC 3878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548428773877200