Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq404 244 1e-59 seq509 127 2e-24 seq98 91.5 2e-13 seq92 89.7 6e-13 seq1565 87.8 2e-12 >seq404 Length=78127 Score = 244 bits (270), Expect = 1e-59 Identities = 362/508 (71%), Gaps = 4/508 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| ||| | | ||||||||||| | |||| | |||| || | ||||| || Sbjct 49805 TCATGCGTGTCTCTCTTGGTATCCACGGCGCCGACATTGACGC-TGCCATCGAGACCTAT 49747 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| |||||||| |||||||| |||||||| || ||| | || || Sbjct 49746 GAGCAGCTTTCCCAGCGCTACTTTACCCACGCCACCCCAACCCTCTTTAACTCGGGCACC 49687 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || || |||||| |||||||| || ||||||||||||||||||||| || Sbjct 49686 TGCTCGCCACAAATGTCGTCGTGCTTCCTTGTCCAGATGAAGGATGACTCGATCGATGGT 49627 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || |||||| | || |||| ||||||||||| | | || || || ||| || Sbjct 49626 ATCTACGATACCCTCAAGCAATGCGCCCTCATCTCCAAGTCGGCCGGAGGCATTGGTCTC 49567 Query 53432 CACTGCTCGAACG-TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 ||| | | | |||| || | | || ||| || || ||||| || | Sbjct 49566 G-CTGTCCACAAGATCCGCGCTGCCCGTTCATATATCCGCGGCACCAACGGTACATCCAA 49508 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || |||| || ||||| ||||| |||||| |||| || || |||||| |||| || || Sbjct 49507 CGGTCTCGTTCCCATGCTTCGCGTGTTCAACGACACTGCTCGCTACGTCGACCAAGGAGG 49448 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||| ||||||||||| | || ||||||||||||||||| ||||||||||| | ||||| Sbjct 49447 TGGCAAGCGCAAGGGAGCCTTTGCCATCTACCTCGAGCCATGGCACGCCGATGTCATGGA 49388 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| || || || || ||| || || | ||||||||||| ||||||||| ||| Sbjct 49387 GTTCCTTGACCTTCGCAAGAACCACGGAAAGGAAGAGATGCGTGCCCGTGACCTCTTTTA 49328 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATG 53698 || || ||| | | || ||||| ||| Sbjct 49327 CGCCCTCTGGGTATCCGATCTCTTTATG 49300 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 |||||| | ||| ||| || |||||||||| || | || || || ||| ||| Sbjct 48197 AAGGAGCTCTACAAGACTGTTTGGGAGATTCGTCAACGTACACTTATCGATATGGCTGCC 48138 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCA 55849 || |||||||| ||||| || || |||| | ||| | ||||| | | || || Sbjct 48137 GACCGTGGTGCCTACATTGATCAAAGCCAGAGCTTCAACGTTTTCATTGCTGAGCCATCG 48078 Query 55850 CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATG 55909 | |||||||||| |||||||||||||||| ||||||||||||| | ||||| || ||| Sbjct 48077 TTTGCCAAGTTGACCTCGATGCACTTTTACTCGTGGAAGAAGGGATTGAAGACTGGAATG 48018 Query 55910 TACTATCTGCGGACCCG 55926 |||||| |||| || || Sbjct 48017 TACTATTTGCGCACTCG 48001 >seq509 Length=66972 Score = 127 bits (140), Expect = 2e-24 Identities = 207/295 (70%), Gaps = 15/295 (5%) Strand=Plus/Plus Query 158962 GTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATG 159021 |||| ||||| ||||| ||||||||||||| |||||||||||| ||||||||| Sbjct 9871 GTCTTGCCAGTGGCAATGACAAAGTCCTCTGCCTTTTCCTGTTGGAGCATCAGCCACATG 9930 Query 159022 GCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCG 159081 |||||||| || || | ||||||||||| || || | ||||| ||||| || || | Sbjct 9931 GCCTCGACATAGTCGCGGGCGTGACCCCAATCACGTTGGGCATTGATGTTTCCAAGATAC 9990 Query 159082 ATGA------CTTTTCCAGACTTTTTCCACTC-AGCCA--GACCGAGCGTGATCTTGCGC 159132 |||| | | |||| | | | | || ||||| | ||| ||||||||||| Sbjct 9991 ATGATCTCGTCGTATCCACA----TGCGATTCTAGCCACGAAACGA--GTGATCTTGCGA 10044 Query 159133 GTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCG 159192 || ||||| || ||| | ||| ||||| |||||||||| || || ||||||| Sbjct 10045 GTGACAAAGGTTGGTCCTCTACGTGGTGACTCGTGGTTAAACAAGATACCATTACAAGCA 10104 Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGG 159247 |||| | ||||| || || || ||| | |||||| || |||| | |||| Sbjct 10105 AACATATCATAGGCTTCACGATAGTTTACACACATCCAGAATGCAAATTGTTTGG 10159 >seq98 Length=772300 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 55486 CAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAA 55545 |||||||||||| ||||||||||||||||| || || || |||||||| |||||||||| Sbjct 408147 CAACTCCCTGCTGGTGGCGCCAATGCCAACGGCTTCCACTTCTCAGATCCTGGGCAACAA 408088 Query 55546 CGAGGCGTTCGAGCCGTACACGACCAACATCTA 55578 ||| || ||||| ||||| | ||||| || Sbjct 408087 TGAGTGTTTTGAGCCTTACACTTCAAACATTTA 408055 >seq92 Length=42423 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/273 (68%), Gaps = 12/273 (4%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || || ||||||| || | ||||| | ||||| | ||||| ||||| || || Sbjct 5074 GTAAAGATATAACGAGCACTAGAGGCATCGTCACCACCTTCTAGACGAGTACCAAACTGA 5133 Query 117365 CCAC--TCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 |||| | || ||| || | ||||||| ||| ||| ||| |||||||| |||| Sbjct 5134 CCACCTTGGGAGAGAAGTGGAAC--GTTGTTGCTGCCAACATAGTCTTGAGCCATCTTGA 5191 Query 117423 CAATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTA 117480 | || || || | | || |||||| || || || || || ||||| || ||||| Sbjct 5192 CGATTGTTGACGACAGTGACTG--CTCACCGTGATGGTATGCTGTATGCTCTGCAACGTA 5249 Query 117481 GCCCGCCAGCTGAGCCACCTTCATGT--CTGACGTCAGGTTCTTCTTGAGGCAGGCATAA 117538 || | || ||||||||||| || | ||||| || ||| ||||| |||||| | Sbjct 5250 TCCAACGAGTTGAGCCACCTTGATTTCACTGAC--CAAGTTACGCTTGAAACAGGCAAAC 5307 Query 117539 ATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | | ||| || |||| ||||||| |||||| Sbjct 5308 AAGATCTTTCGTTGACCCGGCTTCAATCCATCC 5340 >seq1565 Length=26367 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 119082 CGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGT 119141 ||||||| |||||||||||| ||||||| |||||||| | || |||||||| ||||| Sbjct 6848 CGTTGGCCAGCTTGGCACCGAATCCGTTACGACCACCAGCCAAACGCTGCTCAGAGTCGT 6789 Query 119142 TGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGG 119184 |||||||| ||| | || || ||||||| |||||||| Sbjct 6788 CATAGTTGGACGAGGTGAGCAGATGGCCAAAGACAAGCTCGGG 6746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547120202999000