Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq456 132 3e-26 seq593 120 2e-22 seq48 114 8e-21 seq420 113 3e-20 seq1674 111 1e-19 seq79 98.7 6e-16 seq2393 87.8 1e-12 >seq456 Length=67341 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| |||||||| ||||||||| ||||| ||||| ||| Sbjct 21356 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAA 21415 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | ||| || |||||||| || ||||| || || || || || Sbjct 21416 AGGGTACGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGG 21475 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| |||| || | || || | ||| ||||| | ||| || Sbjct 21476 ATTCCCTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAAC 21534 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || || || || ||||| || || ||||| |||||||||||| Sbjct 21535 CTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTAACAAAGATCTGCATGTTG 21586 >seq593 Length=58250 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | ||||||||||| || ||||||||||||||| || || ||| Sbjct 29831 CCGCCACGGAGACGGAGAACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAA 29772 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || ||||| || |||||||| || | ||| ||||| || || || Sbjct 29771 AGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGG 29712 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || || || || || || ||||| || ||| || Sbjct 29711 ATTCCCTCCTTGTCCTGGATC-TTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGAC 29653 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || | || || ||||| || ||||| Sbjct 29652 CTCCAAGGTAATAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||||||| ||||| ||||||||||||||| || || || Sbjct 29147 CCTCCACGAAGGCGGAGTACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 29088 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || ||||| || |||||||| || | ||| ||||| || || || Sbjct 29087 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGA 29028 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| |||| || || || ||| || || ||||| | ||| || Sbjct 29027 ATTCCTTCCTTGTCTTGGATC-TTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAAC 28969 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || ||||| || | || || ||||| || ||||| Sbjct 28968 CTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||||| || ||||| |||||||||||||| || || || Sbjct 29375 CCTCCACGAAGGCGGAGTACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAG 29316 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || ||||| || |||||||| || | ||| ||||| || || || Sbjct 29315 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGG 29256 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| || || || || | || ||||| | ||| || Sbjct 29255 ATTCCTTCCTTGTCT-TGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATCCCTCAAC 29197 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || || || || ||||| || ||||| Sbjct 29196 TTCCAGGGTGATGGTCTTTCCAGTCAAGGTCTTTACAAAGATTTGCAT 29149 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||||| |||||||||||||| || || || || || || Sbjct 29594 AGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGG 29535 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||| || ||||| || || | | ||||| || || || | ||| ||| Sbjct 29534 CCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGAATTCCTTCC 29475 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || || ||||| | || ||||| | ||| ||||||| || Sbjct 29474 TTGTCT-TGAATCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTCGACTTCCAAAGT 29416 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || ||||| || ||||| Sbjct 29415 AATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 >seq48 Length=44992 Score = 114 bits (126), Expect = 8e-21 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| ||||| ||||||||||||||| || || || | ||| || Sbjct 22621 AGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTGCGA 22562 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | | ||||| || || || | ||| ||| Sbjct 22561 CCATCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCC 22502 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || || || || || || |||||| || ||| ||||||| ||| Sbjct 22501 TTGTCTTGGATC-TTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACTTCCAAGGT 22443 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || || |||||||||||| Sbjct 22442 GATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATG 22403 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| |||||||||||||||||| || || || || || Sbjct 22393 AGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGG 22334 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || |||||||| || | ||| || || || || || | |||||| Sbjct 22333 CCGTCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCC 22274 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || || || || | || || || | ||| || |||| || Sbjct 22273 TTGTCT-TGAATCTTGGTCTTTACATTGTCGATGGTATCAGATCCCTCGACCTCCAGTGT 22215 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || ||||| |||||||| Sbjct 22214 GATGGTCTTTCCAGTCAATGTCTTGACAAAGATCTGCAT 22176 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| ||||||||||||||| || || || || || || Sbjct 22849 AGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGG 22790 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | ||| ||||| || || || | ||| ||| Sbjct 22789 CCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCC 22730 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || || || ||| | || || || | ||| || |||| || Sbjct 22729 TTGTCT-TGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAAGT 22671 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || ||||||||||| Sbjct 22670 AATAGTCTTGCCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 >seq420 Length=40905 Score = 113 bits (124), Expect = 3e-20 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || |||||| ||||||||||||||| || || ||||| || || Sbjct 14012 AGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGT 14071 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || || ||||| || | | ||||| || || || | ||| ||| Sbjct 14072 CCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCC 14131 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || || || ||| | || |||||| || ||| || || | || Sbjct 14132 TTGTCTTGGATC-TTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGACCTCAAGTGT 14190 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 || || || || || || || || ||||| || ||||| ||||| Sbjct 14191 GATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCATTATGATT 14236 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || |||||| ||||||||||||||| || || || || || || Sbjct 13784 AGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGA 13843 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||| || |||||||| || | ||| ||||| || || || | ||| ||| Sbjct 13844 CCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCC 13903 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || || || || | || |||||| | || || |||| || Sbjct 13904 TTGTCTTGGATC-TTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGACCTCCAGTGT 13962 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || || ||||||||||| Sbjct 13963 GATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| ||||| ||| ||||| ||||| || || || || || || Sbjct 13328 AGACGGAGAACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGG 13387 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| || || ||||| |||| || || ||||| || || | ||| ||| Sbjct 13388 CCATCCTCAAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCC 13447 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| || || || | || |||||| | ||| || |||| ||| Sbjct 13448 TTGTCTTGGATCTTG-GTCTTGACATTGTCGATGGTGTCTGATCCCTCAACCTCCAAGGT 13506 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || ||||||||||| Sbjct 13507 AATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 13545 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| ||| ||||| ||||| || || || || || || Sbjct 13556 AGACGGAGTACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGG 13615 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||| || |||||||| || | || ||||| || || || | |||||| Sbjct 13616 CCATCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCC 13675 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||||| || || ||| | || || || | ||| || |||| ||| Sbjct 13676 TTATCTTGAATCTTG-GTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAGGT 13734 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || ||||||||||| Sbjct 13735 AATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 13773 >seq1674 Length=6646 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||||||||| ||||||||| ||||| ||||| ||||| || || Sbjct 140 AGACGGAGAACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGT 81 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || ||||| || || | ||| ||||| || || || | ||| ||| Sbjct 80 CCGTCCTCGAGTTGCTTTCCGGCGAAAATAAGACGTTGTTGATCGGGGGGGATTCCTTCC 21 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 20 TTGTCTTGGATCTT 7 >seq79 Length=127859 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| |||||||| ||||||||| ||||| ||||| ||||| || || Sbjct 118839 AGACGGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTGCGG 118780 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | ||| || ||||| || || ||||| || || || || || | ||||||| Sbjct 118779 CCATCCTCCAATTGCTTGCCGGCGAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCC 118720 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 118719 TTGTCTTGGATCTT 118706 >seq2393 Length=1004 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||||||| || ||| |||||||||||||| || || ||| Sbjct 872 CCTCCACGAAGGCGGAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 931 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| ||||| || ||||| || || | | |||||||| || || Sbjct 932 AGAGTGCGACCGTCTTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGTGGG 991 Query 34600 ACTCCCTCCTTGT 34612 | ||| ||||||| Sbjct 992 ATTCCTTCCTTGT 1004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314675880083165