Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq816 682 0.0 seq400 360 7e-95 seq1667 131 7e-26 seq334 127 8e-25 >seq816 Length=14434 Score = 682 bits (756), Expect = 0.0 Identities = 559/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Plus Query 23472 CATGACACCAGAAATTATTCTCCAGCGAACTGGCGTGGATATTACCAGCC-TCGACCAGG 23530 ||||||||| || ||||| || ||||| || || | || | | ||| |||| |||| Sbjct 8566 CATGACACCGGACATTATCCTGCAGCGTACCGGGATCGACGTGAG-AGCTGTCGAACAGG 8624 Query 23531 GCGATGATGGATGGCACAAGCTGAGACTCGGTGTTATCACTGCTTCAGAAGTTCACAATG 23590 | ||||||| ||||||||| | | ||||| || ||||| ||||||||||||||||| | Sbjct 8625 GGGATGATGCATGGCACAAATTACGGCTCGGCGTCATCACCGCTTCAGAAGTTCACAACG 8684 Query 23591 TGATAGCAAAGCCACGTTCCGGCAGCAAATGGCCTGATACAAAAATGTCATACTTCCACA 23650 ||||||||||||| || || || | || |||||||| | |||||||| |||||||||| Sbjct 8685 TGATAGCAAAGCCCCGCTCAGGAAAGAAGTGGCCTGACATGAAAATGTCCTACTTCCACA 8744 Query 23651 CCCTGCTGGCTGAAGTTTGTACTGGCGTGGCACCGGAAGTTAACGCTAAGTCGCTCGCAT 23710 ||||||||||||| ||||| || || ||||| ||||||||||| |||||| |||| || | Sbjct 8745 CCCTGCTGGCTGAGGTTTGCACCGGTGTGGCTCCGGAAGTTAATGCTAAGGCGCTGGCCT 8804 Query 23711 GGGGAAAGCAATACGAAGATGATGCCCGTGCCCTCTTCGAATTTATCGCGGATGTTACCG 23770 ||||||| || ||||| | || ||| | ||||| || || |||| | | || | | Sbjct 8805 GGGGAAAACAGTACGAGAACGACGCCAGAGCCCTGTTTGAGTTTACTTCCGGCGTGAATG 8864 Query 23771 TCTCGGAAACGCCAATAATTTTTCGTGACGAAAGCATGCGCACCGCCTGCTCTCCCGACG 23830 | | ||| | || || || | ||| |||||||| ||||||||||||||||||||||| | Sbjct 8865 TTACTGAATCCCCGATCATCTATCGCGACGAAAGTATGCGCACCGCCTGCTCTCCCGATG 8924 Query 23831 GTTTATGCAGCGACGGTAACGGTCTTGAGCTTAAATGCCCTTTTACTTCCCGCGACTTCA 23890 |||||||||| ||||| ||||| ||||| || |||||||| ||||| ||||| || |||| Sbjct 8925 GTTTATGCAGTGACGGCAACGGCCTTGAACTGAAATGCCCGTTTACCTCCCGGGATTTCA 8984 Query 23891 TGAAATTCCGGCTTGGCGGCTTTGACGCTATCAAGCCTGCTTACATGGCCCAGGTGCAAT 23950 ||||||||||||| || || || || || || ||| | |||||||||||||||||||| | Sbjct 8985 TGAAATTCCGGCTCGGTGGTTTCGAGGCCATAAAGTCGGCTTACATGGCCCAGGTGCAGT 9044 Query 23951 TCAGCATGTGGGTTACAGACAAGGACGCCTGGTACTTCGCCAACTACGACCCACGCATGA 24010 |||||||||||| || || || ||||||||||| |||||||| |||||||| |||| Sbjct 9045 ACAGCATGTGGGTGACGCGAAAAGATGCCTGGTACTTTGCCAACTATGACCCACGAATGA 9104 Query 24011 AGCGTGAAGGCCTGCATTATGTCGTGGTCGAGCGGGATGAAAAGTACATGGCGAGTTTTG 24070 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 9105 AGCGTGAAGGCCTGCATTATGTCGTGGTTGAGCGGGATGAAAATTACATGGCGAGTTTTG 9164 Query 24071 ATGAGATGGTGCCGGAGTTCATCGACAAAATGGACGAAGCACTGGCGGAAATTGGTTTTG 24130 | ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 9165 ACGAGATGGTGCCGGAGTTCATCGAAAAAATGGACGAGGCACTGGCTGAAATTGGTTTTG 9224 Query 24131 TATTTGGAGAACAATGG 24147 ||||||| || |||||| Sbjct 9225 TATTTGGGGAGCAATGG 9241 >seq400 Length=38681 Score = 360 bits (398), Expect = 7e-95 Identities = 396/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Minus Query 30392 AAATACACCCTCATTTACGCAGATCCCCCCTGGACATTCCGCGACAAAGCAACCGATGGT 30451 |||||||| |||||||||||||| || || ||| || ||| ||||||||| |||| || Sbjct 35822 AAATACACTCTCATTTACGCAGACCCGCCTTGGGTATACCGTGACAAAGCAGCCGACGGC 35763 Query 30452 CAACGCGGTGCAAGTTTTAAATATCCGGTCATGAGTCTTCTGGATATCTGCCGCCTCCCG 30511 | ||||| || | || || |||||||| |||| | ||||| ||||||||||| || Sbjct 35762 GAGCGCGGCGCCGGCTTCAAGTATCCGGTTATGAACGTGCTGGACATCTGCCGCCTGCCT 35703 Query 30512 GTATGGGAACTGGCAGCCGATAATTGCCTGTTGTCTATGTGGTGGGTGCCTACACAACCA 30571 || ||||| ||||| ||||| |||||||| || ||||||||||||| || ||||| || Sbjct 35702 GTGTGGGATCTGGCTGCCGAAGATTGCCTGCTGGCTATGTGGTGGGTTCCAACACAGCCG 35643 Query 30572 CTTGAAGCATTGAAGGTTGTAGAAGCGTGGGGCTTTCGTCTGGTGACGATGAAAGGATTA 30631 ||||||| ||||||||| | ||||||||||| ||||| ||| |||||||||| ||||| Sbjct 35642 ATTGAAGCGTTGAAGGTTATCGAAGCGTGGGGATTTCGCCTGATGACGATGAAGGGATTC 35583 Query 30632 ACCTGGAACAAATGCGGGAAAAGACAGACCGACAAGCTGGTCATGGGTATGGGTAGCACC 30691 |||||| ||||| ||| | || | | ||| | ||| || ||||| || Sbjct 35582 ACCTGGCACAAA---ACGAATAAGCACAAAGGCAACAGCGCCATCGGCATGGGACACATG 35526 Query 30692 ACTCGCGCTAACAGCGAAGACTGCCTTTTTGCAGTGAAAGGAAATCTGCCCGAACGCATT 30751 || || || |||||||||||||| || ||||| ||| || || ||||| | ||||| Sbjct 35525 ACCCGGGCGAACAGCGAAGACTGTCTGTTTGCGGTGCGCGGGAAACTGCCGGCGCGCATG 35466 Query 30752 AACGCCGGAATAATCCAGTCAT-TCACTGCACCGCGCCTTGATCACTCCCGCAAGCCGGA 30810 |||| || |||| ||| |||| || |||||||| || |||| ||||||||||| Sbjct 35465 GACGCTTCGATCTGCCAG-CATGTCACGGCGCCGCGCCTGGAGAACTCGCGCAAGCCGGA 35407 Query 30811 TATGGCTCGAGAAAAGCTTGTGCAACTTCTTGGCGATGTTCCCCGGATAGAACTGTTCGC 30870 || |||| ||||| ||||| | ||||||||||| || || || || || ||||| Sbjct 35406 CGTGATCAGAGAGAAGCTGGTGCAGTTGCTTGGCGATGTGCCGCGCATCGAGCTATTCGC 35347 Query 30871 CCGCCACACCTCGCATGGATTTGATGTATGGGGTAACCAATGCG 30914 |||||| | |||||||| ||||| || ||||| ||||| |||| Sbjct 35346 CCGCCAGTCGTCGCATGGGTTTGACGTTTGGGGAAACCAGTGCG 35303 >seq1667 Length=2119 Score = 131 bits (144), Expect = 7e-26 Identities = 166/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 5388 TTACTCTCCCCGTGCCGCCTTACGCCTGTCCTCTCTGATTTTGAAATACAGGTTCGTCAG 5447 ||| || || | || ||||| ||| | || ||| | || |||||||| ||||| ||||| Sbjct 2091 TTATTCACCTCTCGCAGCCTTGCGCTTATCTTCTTTAATCTTGAAATAAAGGTTTGTCAG 2032 Query 5448 GTACGTCAGCAGACCAAACAGCAGACTCCCCAGCACGCCTATTGCCGCCCACTGAGACGG 5507 |||||||||||| ||||| | ||| || |||||||| |||||||| |||||||| || || Sbjct 2031 GTACGTCAGCAGGCCAAATACCAGGCTACCCAGCACACCTATTGCTGCCCACTGTGAGGG 1972 Query 5508 GGAAACCCTGTCCAGCAACTGCAGGAACCAGTAGCCCGTTCCCACCGCTGACGTGGTGTA 5567 | || | || |||| ||| | |||||||| || | | | ||||| ||| || Sbjct 1971 CGTGACTTTATCGAGCAGCTGTAAAAACCAGTAACCGGCACTACCTGCTGAGGTGCCATA 1912 Query 5568 TGACACACCTGTTGTGATTTTTTCCATCTGGTTCAT-ACCCCGCCTC 5613 | ||||| ||||| | || ||||| ||||| ||||| |||| Sbjct 1911 GGCGACACCCGTTGTTAACTTATCCATGGATTTCATAACCCCACCTC 1865 >seq334 Length=953 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Plus Query 2487 CCGGTTTCTTCCACCACCGCACCGGACAGGCGGCTTCGCGGGAAATCGCTCCCATCTCGT 2546 |||||||||||||||| ||||||||| | ||| || | ||| || | || | ||| || Sbjct 274 CCGGTTTCTTCCACCATCGCACCGGAAAAGCGACTATGAGGGTAACC-CTGCG-TCT-GT 330 Query 2547 GAAAAATGAGAAAACCCGGTGTGCATCGTTTTTGATTATCCCCGCACACTCACGCAGA-- 2604 | | | ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 331 CAGCACAGT-AAAACCCGGTGTGCATCGTTTTTGATTATTCCCGCACACTCACGCAGAAG 389 Query 2605 TAA-----GGT--GGCTGCAGTCTCTGTTAATGCGGGAATACGGCGACGATACGGCGCA 2656 || || |||| | ||| ||||||||||||||||||||||||||| ||||| Sbjct 390 GAATTCCCCGTCGGGCTACGGTCATGGTTAATGCGGGAATACGGCGACGATACAGCGCA 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195157938006570