Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq816 686 0.0 seq400 354 3e-93 seq24 241 5e-59 seq1667 127 8e-25 seq334 127 8e-25 >seq816 Length=14434 Score = 686 bits (760), Expect = 0.0 Identities = 560/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Minus Query 11622 CCATTGTTCTCCAAATACAAAACCAATTTCTGCCAGTGCTTCGTCCATTTTGTCGATGAA 11681 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 9241 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 9182 Query 11682 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 11741 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 9181 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 9122 Query 11742 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 11801 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 9121 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 9062 Query 11802 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 11861 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 9061 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 9002 Query 11862 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTAAAGGGGCATTTAAGCTCAAGACCGTT 11921 || |||||||| |||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 9001 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 8942 Query 11922 ACCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 11981 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | || Sbjct 8941 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 8882 Query 11982 TATGGGTGTTTCCGAGACGGTAACATCCGCGATAAATTCAAAGAGGGCACGGGCATCATC 12041 || || | ||| | || | || | | |||| ||||| ||||| | ||| || | Sbjct 8881 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 8822 Query 12042 TTCATATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 12101 || || || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 8821 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 8762 Query 12102 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 12161 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 8761 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 8702 Query 12162 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 12221 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 8701 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 8642 Query 12222 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 12280 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 8641 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 8583 Query 12281 TAATTTCTGGTGTCATG 12297 |||| || ||||||||| Sbjct 8582 TAATGTCCGGTGTCATG 8566 >seq400 Length=38681 Score = 354 bits (392), Expect = 3e-93 Identities = 395/524 (75%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 3099 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3158 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 35303 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 35362 Query 3159 GGGGAACATCGCCAAGAAGTTGCACAAGTTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3218 | || ||||||||||| | ||||| || || |||| || ||||||||||| |||| Sbjct 35363 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 35422 Query 3219 GATCAAGGCGTGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3277 || ||||| || || |||| ||| |||| || |||| ||||| | ||||| Sbjct 35423 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 35481 Query 3278 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3337 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 35482 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 35541 Query 3338 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3397 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 35542 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 35598 Query 3398 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3457 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 35599 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 35658 Query 3458 CACCACATAGCCAACAGGCAATTCTCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3517 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 35659 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 35718 Query 3518 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3577 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 35719 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 35778 Query 3578 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3621 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 35779 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 35822 >seq24 Length=857 Score = 241 bits (266), Expect = 5e-59 Identities = 219/274 (80%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 31696 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGAGATAAAAAAGTCAGAGAG 31755 || ||||||||||| ||||| | ||||||||||| ||||| || ||||| | |||||| Sbjct 540 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 599 Query 31756 CTGGAGCTGGCAAACGCAACCATTACTGATATGCAGGTGCGCCAGCGTGATGTTGCTGCG 31815 ||| ||||||| ||||| | |||||||| |||||| |||||||||||||||||||||| Sbjct 600 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 659 Query 31816 CTTGATGCTAAATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 31875 || |||| |||||| ||| ||| ||||| |||||| |||||||||||| |||||||| Sbjct 660 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGT 719 Query 31876 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGCTCAACGCCACCTGCCCCGGTACCGTG 31935 | || |||||||||||||||| || ||| |||| || ||| | || | ||| Sbjct 720 GATGGTGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTG--TCAGT-CAGTG 776 Query 31936 CGTGAAGCCACCGGCACCTCCGGCGTGGGCAATG 31969 |||||||||||| | |||||||||||| |||| Sbjct 777 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATG 810 >seq1667 Length=2119 Score = 127 bits (140), Expect = 8e-25 Identities = 165/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 29866 GAGGCGGGGT-ATGTACCAGATGGAAAAAATCACAACAGGTGTGTCATACACCACGTCAG 29924 |||| ||||| ||| | ||||| || | ||||| ||||| | || ||| |||| Sbjct 1865 GAGGTGGGGTTATGAAATCCATGGATAAGTTAACAACGGGTGTCGCCTATGGCACCTCAG 1924 Query 29925 CGGTGGGAACGGGCTACTGGTTCCTGCAGTTGCTGGACAGGGTTTCCCCGTCTCAGTGGG 29984 | | | | || |||||||| | ||| |||| || | || | || || ||||||| Sbjct 1925 CAGGTAGTGCCGGTTACTGGTTTTTACAGCTGCTCGATAAAGTCACGCCCTCACAGTGGG 1984 Query 29985 CGGCAATAGGCGTGCTGGGGAGTCTGCTGTTTGGTCTGCTGACGTACCTGACGAACCTGT 30044 | |||||||| |||||||| || ||| | ||||| ||||||||||||||||| ||||| | Sbjct 1985 CAGCAATAGGTGTGCTGGGTAGCCTGGTATTTGGCCTGCTGACGTACCTGACAAACCTTT 2044 Query 30045 ATTTCAAAATCAGAGAGGACCGGCGTAAGGCGGCGCGGGGAGAGTAA 30091 ||||||| || | ||| || ||| ||||| ||| | || || ||| Sbjct 2045 ATTTCAAGATTAAAGAAGATAAGCGCAAGGCTGCGAGAGGTGAATAA 2091 >seq334 Length=953 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Minus Query 33142 TGCGCCGCATCGTCGCCGTATTCCCGCATTAACAGAGACCGCAGCC--ACC-----TTA- 33193 ||||| | ||||||||||||||||||||||||| ||||| |||| || || Sbjct 448 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 389 Query 33194 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 33252 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 388 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 330 Query 33253 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACCGG 33311 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||||| Sbjct 329 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACCGG 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200964092399660