Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq24 655 0.0 seq585 140 9e-29 seq1910 114 3e-21 seq208 109 1e-19 seq1130 87.8 5e-13 seq816 86.0 2e-12 >seq24 Length=857 Score = 655 bits (726), Expect = 0.0 Identities = 422/461 (92%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 38347 GTGGCGGGGCTATTGCTATAGCATCTGTATTAATCACAGGCCCTAGTGGTAACGATGGTC 38406 ||||||| || |||||||||||||| || |||||||| ||||| |||||||||||||||| Sbjct 17 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 76 Query 38407 TGGAAGGTGTGAGGTATAAACCCTACAAAGACATCGTTGGTGTATGGACAGTGTGTTACG 38466 |||||||||| || || | ||| |||||||| || |||||||||||||| || ||| ||| Sbjct 77 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 136 Query 38467 GGCATACAGGCAAAGACATCATACCCGGTAAAACGTATACCGAGGCAGAATGCAAATCCC 38526 |||||||||| ||||||||||| | |||||||||||||||| | |||||||||||| ||| Sbjct 137 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 196 Query 38527 TCCTGAATAAAGACCTCGCTACTGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATA 38586 |||||||||||||||| || || |||||||||||||||||||||||||| ||||| |||| Sbjct 197 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 256 Query 38587 TACCGGAAACAACGCGCGGCGCCCTTTACTCGTTCGTCTACAACGTTGGATCTGGCAATT 38646 |||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||| Sbjct 257 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 316 Query 38647 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGTGCATGTGATC 38706 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 317 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 376 Query 38707 AGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGCCTGATGACTCGCCGTG 38766 ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||| Sbjct 377 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 436 Query 38767 AGATTGAGCGTGAAGTCTGTTTGTGGGGGCAGCAATGAACA 38807 |||||||||||||| ||||||||||||| |||||||||||| Sbjct 437 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACA 477 Score = 334 bits (370), Expect = 2e-87 Identities = 217/238 (91%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 38903 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGTCTGTCATGGGCTGTTA 38962 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 481 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTA 540 Query 38963 ATCATTACCGTGATAACGCCATTACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAAC 39022 ||||||||||||||||||||||||||||||||| |||||||| ||||| | ||| |||| Sbjct 541 ATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAAC 600 Query 39023 TGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGATGCAC 39082 |||||| ||||| ||| | ||||||||||||||| |||||||||||||| || ||||| Sbjct 601 TGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCAC 660 Query 39083 TTGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 39140 | |||| ||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 661 TGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 718 >seq585 Length=21099 Score = 140 bits (154), Expect = 9e-29 Identities = 345/513 (67%), Gaps = 14/513 (3%) Strand=Plus/Plus Query 16928 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 16987 ||||||||||| | |||||||| | ||||||||| |||||||| ||||||||||||||| Sbjct 20183 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 20242 Query 16988 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 17047 ||||| || || || | ||| ||| | |||| ||| | ||| || | || | | | | Sbjct 20243 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 20302 Query 17048 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCAC--CCCGACGGGCTTACCAC 17105 | ||||| ||||| || || ||||| |||||||| || |||| |||| ||||| Sbjct 20303 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCG--CGGCTGACCAC 20360 Query 17106 GGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGT-CCGGCGAGAAC-GA 17163 | || | ||||| ||| || | | | || || || |||| | || Sbjct 20361 GCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTGA 20418 Query 17164 CATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCA 17223 || | |||||| | | | || || || || | || || || || || ||| Sbjct 20419 CAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACCA 20478 Query 17224 GCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCAC 17283 ||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| ||| Sbjct 20479 GCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCAC 20538 Query 17284 GGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTAT 17342 |||||||| || |||| | || | || ||| |||||| |||| | || ||| | Sbjct 20539 AGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTGT 20597 Query 17343 ACCG--GTAAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGC 17400 || | || ||| ||||||| ||| ||| ||| | |||||| || | || || Sbjct 20598 ACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGGC 20655 Query 17401 AAGCCAGCGCCCCATCTGGTAGCCTCTCTGGGT 17433 | | | || | |||| || ||| | ||||| Sbjct 20656 ACGGTAACGGCTCATCGGGACGCCGTTTTGGGT 20688 Score = 140 bits (154), Expect = 9e-29 Identities = 345/513 (67%), Gaps = 14/513 (3%) Strand=Plus/Plus Query 39553 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 39612 ||||||||||| | |||||||| | ||||||||| |||||||| ||||||||||||||| Sbjct 20183 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 20242 Query 39613 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 39672 ||||| || || || | ||| ||| | |||| ||| | ||| || | || | | | | Sbjct 20243 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 20302 Query 39673 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCAC--CCCGACGGGCTTACCAC 39730 | ||||| ||||| || || ||||| |||||||| || |||| |||| ||||| Sbjct 20303 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCG--CGGCTGACCAC 20360 Query 39731 GGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGT-CCGGCGAGAAC-GA 39788 | || | ||||| ||| || | | | || || || |||| | || Sbjct 20361 GCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTGA 20418 Query 39789 CATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCA 39848 || | |||||| | | | || || || || | || || || || || ||| Sbjct 20419 CAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACCA 20478 Query 39849 GCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCAC 39908 ||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| ||| Sbjct 20479 GCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCAC 20538 Query 39909 GGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTAT 39967 |||||||| || |||| | || | || ||| |||||| |||| | || ||| | Sbjct 20539 AGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTGT 20597 Query 39968 ACCG--GTAAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGC 40025 || | || ||| ||||||| ||| ||| ||| | |||||| || | || || Sbjct 20598 ACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGGC 20655 Query 40026 AAGCCAGCGCCCCATCTGGTAGCCTCTCTGGGT 40058 | | | || | |||| || ||| | ||||| Sbjct 20656 ACGGTAACGGCTCATCGGGACGCCGTTTTGGGT 20688 >seq1910 Length=22743 Score = 114 bits (126), Expect = 3e-21 Identities = 253/377 (67%), Gaps = 2/377 (1%) Strand=Plus/Plus Query 16916 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 16975 || || || | ||||| ||| || | || | || | ||| | || ||||| ||| | Sbjct 10385 TAACCGGTTGACGGCAGCCACTCCGTTTTGAAGCTGCGGAACAGCCGTTCCATCGGGGCG 10444 Query 16976 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 17035 || ||||| || ||||| || || |||||||| || | ||||| || | ||||| | | Sbjct 10445 TTGTCCCAACAATTTCCCCGACGGCTCATACTTTGTCGTATCCGATAGCGCCACAATCGC 10504 Query 17036 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCA-CCCCGAC 17094 || ||||| | | ||| | || ||||| |||||||| || |||| || |||| | Sbjct 10505 TGACGGAATTTTCGGCTGGCGTACTGACTACCTTGATCCGAATGAAACAGCAGCCCCTGC 10564 Query 17095 GGGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGG 17154 || | ||| || || | ||||||||||| |||| || ||| | ||| || Sbjct 10565 GGTCG-ACCGCGCTGCTCAAAGGCCATTTCCAGCGCTTGCACAACAAGGTCGGCGTCGGG 10623 Query 17155 CGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAG 17214 | | ||| | ||||||||||| | | | |||||||| || | || || || | Sbjct 10624 CCGTAGCGAGAATGCCCAGCCCACCGCTCGGCGAGCGAACAGATCCAACACCACAGCCAA 10683 Query 17215 GTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGG 17274 ||| ||| ||| || ||| | |||||| | ||| |||||||| || |||||||| Sbjct 10684 GTAGTACCATCGCCCCTGCGCCCAAACATAGGTGATATCGCCGCACCAGACGTGATTTGG 10743 Query 17275 CTCGGTCACGGCGAACT 17291 | | ||| | ||||| Sbjct 10744 CGCCTCCACCGTGAACT 10760 Score = 114 bits (126), Expect = 3e-21 Identities = 253/377 (67%), Gaps = 2/377 (1%) Strand=Plus/Plus Query 39541 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 39600 || || || | ||||| ||| || | || | || | ||| | || ||||| ||| | Sbjct 10385 TAACCGGTTGACGGCAGCCACTCCGTTTTGAAGCTGCGGAACAGCCGTTCCATCGGGGCG 10444 Query 39601 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 39660 || ||||| || ||||| || || |||||||| || | ||||| || | ||||| | | Sbjct 10445 TTGTCCCAACAATTTCCCCGACGGCTCATACTTTGTCGTATCCGATAGCGCCACAATCGC 10504 Query 39661 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCA-CCCCGAC 39719 || ||||| | | ||| | || ||||| |||||||| || |||| || |||| | Sbjct 10505 TGACGGAATTTTCGGCTGGCGTACTGACTACCTTGATCCGAATGAAACAGCAGCCCCTGC 10564 Query 39720 GGGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGG 39779 || | ||| || || | ||||||||||| |||| || ||| | ||| || Sbjct 10565 GGTCG-ACCGCGCTGCTCAAAGGCCATTTCCAGCGCTTGCACAACAAGGTCGGCGTCGGG 10623 Query 39780 CGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAG 39839 | | ||| | ||||||||||| | | | |||||||| || | || || || | Sbjct 10624 CCGTAGCGAGAATGCCCAGCCCACCGCTCGGCGAGCGAACAGATCCAACACCACAGCCAA 10683 Query 39840 GTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGG 39899 ||| ||| ||| || ||| | |||||| | ||| |||||||| || |||||||| Sbjct 10684 GTAGTACCATCGCCCCTGCGCCCAAACATAGGTGATATCGCCGCACCAGACGTGATTTGG 10743 Query 39900 CTCGGTCACGGCGAACT 39916 | | ||| | ||||| Sbjct 10744 CGCCTCCACCGTGAACT 10760 >seq208 Length=140336 Score = 109 bits (120), Expect = 1e-19 Identities = 242/361 (67%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 16916 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 16975 || || ||||| || | ||| || ||||| || | || | ||||||||| || | Sbjct 12782 TAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGAG 12841 Query 16976 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 17035 |||||||||||||| || || |||||||| ||||| ||||||||| | ||| || | Sbjct 12842 TTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCGC 12901 Query 17036 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 17095 ||||||||| | | ||| || || || ||||| |||||| || ||| |||| Sbjct 12902 TGCCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCACCTGCTGT 12961 Query 17096 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 17155 ||||| || || || | ||||| || || || || || ||| | |||||| Sbjct 12962 GGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCCGGC 13021 Query 17156 GAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGG 17215 || | |||||||| | | | | | |||| || || || ||||| ||| Sbjct 13022 TTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCCAGG 13081 Query 17216 TACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTG 17273 || |||||| ||| || |||||| ||||| | ||| |||||||| ||| | || | Sbjct 13082 TAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGTTCG 13139 Query 17274 G 17274 | Sbjct 13140 G 13140 Score = 109 bits (120), Expect = 1e-19 Identities = 242/361 (67%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 39541 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 39600 || || ||||| || | ||| || ||||| || | || | ||||||||| || | Sbjct 12782 TAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGAG 12841 Query 39601 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 39660 |||||||||||||| || || |||||||| ||||| ||||||||| | ||| || | Sbjct 12842 TTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCGC 12901 Query 39661 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 39720 ||||||||| | | ||| || || || ||||| |||||| || ||| |||| Sbjct 12902 TGCCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCACCTGCTGT 12961 Query 39721 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 39780 ||||| || || || | ||||| || || || || || ||| | |||||| Sbjct 12962 GGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCCGGC 13021 Query 39781 GAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGG 39840 || | |||||||| | | | | | |||| || || || ||||| ||| Sbjct 13022 TTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCCAGG 13081 Query 39841 TACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTG 39898 || |||||| ||| || |||||| ||||| | ||| |||||||| ||| | || | Sbjct 13082 TAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGTTCG 13139 Query 39899 G 39899 | Sbjct 13140 G 13140 >seq1130 Length=54118 Score = 87.8 bits (96), Expect = 5e-13 Identities = 87/110 (79%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 1781 TTTGAAGAGTTCCGTCTATATCATCGCGACGAGAACGGCAAGATTGTCAAGACCAACGAT 1840 |||||||||||||| | ||||| ||| | || |||||||||| ||||| ||||| Sbjct 37687 TTTGAAGAGTTCCGCATGTATCACCGCAAGGA---CGGCAAGATTATCAAGCTGGACGAT 37743 Query 1841 GA--TGTGCTCGATGCTACTCGCTACGGCTACATGATGCGCCGCTTCGCC 1888 || ||| ||| || || ||||||| |||||||||||||||||||||| Sbjct 37744 GACTTGTTGTCG--GCCACACGCTACGCCTACATGATGCGCCGCTTCGCC 37791 >seq816 Length=14434 Score = 86.0 bits (94), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 4/78 (5%) Strand=Plus/Minus Query 22734 CTCCATAAAACAAAACCCGTCGTAGCGAGTTCAGACAAAATAAATCCCCGCGAGTACGAG 22793 ||||||||||||||||||| ||||||||||||||| |||| |||||| || ||| |||| Sbjct 11250 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11191 Query 22794 GATG----TTATTGCTGC 22807 |||| | |||||||| Sbjct 11190 GATGCTGTTCATTGCTGC 11173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132138020553000