Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq4259 127 8e-25 seq45 100 1e-16 seq6789 82.4 3e-11 >seq4259 Length=4273 Score = 127 bits (140), Expect = 8e-25 Identities = 278/406 (68%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 5851 GGGACGGGGAAGACCTTCCTGGCCATCCACCACGGCC-TGCGCCTGCTGGAGGCCGGGGA 5909 || || || ||||||| ||| ||||| ||| |||| | | | || ||||| | | Sbjct 4271 GGTACCGGCAAGACCTACCTCGCCATGG-CCAAGGCCGTTCAGGCGTTGCAGGCCAAGCA 4213 Query 5910 GATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCT 5969 | || || || || | ||| |||| || || ||||| | ||| || ||||| || Sbjct 4212 GGTCTCTCGGATCATCTTGACCAGGCCGGCAGTCGAGGCCGGCGAGCGACTGGGCTTTCT 4153 Query 5970 GCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGGTGAT 6029 ||||||||| || |||||||||| | || || ||| |||| ||| ||||| || Sbjct 4152 GCCCGGCACGCTGCACGAGAAGATCGATCCGTATCTCCGCCCGCTGCACGACGCATTGCA 4093 Query 6030 CGACCTGGTCGG-CCCGA--CGATGACGAAGCGCCTCCTCGAGTC--GCGCCAGCTGGAG 6084 |||| || | | ||||| |||| ||||| | | || | | | || | ||| Sbjct 4092 CGACATGATGGATCCCGAGGCGATTCCGAAGTTGATGC---AGGCCGGAGTCATC--GAG 4038 Query 6085 GTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCTGAC 6144 ||||| ||||| ||||||||||| ||||||||| |||||||| | | |||| || ||| Sbjct 4037 GTCGCTCCGCTCGCCTACATGCGTGGCCGGACGCTCAACGACGCCTTCATCATCTTGGAC 3978 Query 6145 GAGATGCAGAACGCCAC-CCCGCGCCAGACCGCGCTGCTGGTGACCCGCCTGGGCTTCGG 6203 || ||||||| |||| ||| | |||| | || | |||||||||| || ||||| Sbjct 3977 GAAGCGCAGAACACCACGGCCGAG-CAGATGAAGATGTTCCTGACCCGCCTCGGGTTCGG 3919 Query 6204 GACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGCCG 6249 | ||| ||| | | ||| ||| | ||||| ||| |||||| Sbjct 3918 TTCCAAGATCGTGGTCACCGGAGACGTGACCCAGGTCGATCTGCCG 3873 >seq45 Length=185997 Score = 100 bits (110), Expect = 1e-16 Identities = 289/436 (66%), Gaps = 18/436 (4%) Strand=Plus/Minus Query 5822 ACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT--CCA 5879 ||||| | | | || || |||||| || || || || ||||||| ||||||| | || Sbjct 136130 ACGACATCAACTTCGGCATCGGCCCTGCCGGTACCGGCAAGACCTACCTGGCCGTGGCCT 136071 Query 5880 CCACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGC 5939 | ||| | ||| |||||| || | || | | ||| || | | || || || Sbjct 136070 GCGCGGTCGATGCC--CTGGAGCGCGAGCAGGTGCGACGCATCCTGCTGGTGCGTCCGGC 136013 Query 5940 CGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACC 5999 || || || | |||||||| ||||| |||||||| ||| | ||||||| | || Sbjct 136012 GGTGGAAGCCGGCGAGAAGCTGGGCTTTTTGCCCGGCGACCTGGCCCAGAAGATCGACCC 135953 Query 6000 CTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGCC-CGACGA--TGACGAA 6056 ||||| |||| | |||||| | ||| || ||||| ||| | || | || Sbjct 135952 GTACCTGCGCCCGCTCTACGACGCGCTCTACGAGATGCTCGGCTTCGAATACGTGGCCAA 135893 Query 6057 GCGCCTCCTCGAGTCGCGCCAGCTG---GAGGTCGCCCCGCTGGCCTACATGCGAGGCCG 6113 || | ||||| |||||| || ||| |||||||||||||||||||||| ||||| Sbjct 135892 GC---TGATCGAG---CGCCAGGTGATCGAGATCGCCCCGCTGGCCTACATGCGTGGCCG 135839 Query 6114 GACGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCACC-CCGCGCCAGA 6172 ||| | ||| ||| | |||| | ||||| | |||||| ||||| || | |||| Sbjct 135838 TACGCTGAACAACAGCTTCATCATTCTCGACGAAAGCCAGAACACCACCGTCGAG-CAGA 135780 Query 6173 CCGCGCTGCTGGTGACCCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGG 6232 | || | ||||||| | || ||||| | | ||||| | | ||| ||| Sbjct 135779 TGAAGATGTTCCTGACCCGGATCGGTTTCGGCTCCACCGCCGTGATCACCGGCGACGTCA 135720 Query 6233 CCCAGTGCGACCTGCC 6248 ||||| ||||||||| Sbjct 135719 CCCAGGTCGACCTGCC 135704 >seq6789 Length=872 Score = 82.4 bits (90), Expect = 3e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738 ||||| ||||| | |||| ||||||| ||| ||||||||||| ||| | || || Sbjct 713 AAGGCCAAGCTGATCGTCGTCGACGAGTGCTCGATGGTGGACGAACAGCTCGGCCGCGAT 772 Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTC 32798 || || |||||| || || || | ||||||||||| | ||||||||||||| | Sbjct 773 CTCATGAGCTTCGGCACCCCCATTCTGGTGCTGGGCGACCCTGGCCAGCTGCCGCCCATA 832 Query 32799 ATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCC 32838 || | ||| ||||||||| | || || | || |||| Sbjct 833 TCCGGCGGCGGCTTCTTCACCGAACACGAGCCGGATTTCC 872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191456153750400