Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq1143 282 2e-71 seq211 269 1e-67 seq7489 255 3e-63 seq4107 100 1e-16 seq1862 95.1 6e-15 seq1863 82.4 4e-11 >seq1143 Length=31399 Score = 282 bits (312), Expect = 2e-71 Identities = 554/806 (69%), Gaps = 25/806 (3%) Strand=Plus/Plus Query 64067 ACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 64126 ||||| || ||| ||||| ||| |||||| | || || | ||| | ||||| ||| Sbjct 23731 ACCGGTTCGCTCGGCCTGGATATCGCGCTGGGCGTGGGCGGCTTGCCGCGCGGCCGCGTG 23790 Query 64127 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 64186 |||||||||||||| || ||||| || || || | || ||| || || | | || Sbjct 23791 GTGGAAATCTACGGTCCGGAATCGTCGGGTAAAACCACCCTGACCCTGCAAACCATTGCT 23850 Query 64187 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCT 64246 | ||| || || || | | ||||| ||||| || |||||| | || ||| Sbjct 23851 GAAATGCAAAAACTGGGCGGTACCTGCGCCTTTATCGATGCCGAGCACGCGCTCGACGTC 23910 Query 64247 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACT 64306 | ||||| | ||| || ||| |||| | | | || | |||||||| || Sbjct 23911 GGCTACGCGCAAAAGCTGGGCGTGAACCTGCATGAATTGCTGATTTCGCAGCCGGATACG 23970 Query 64307 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--TCG 64364 ||||||||||| ||||| ||| ||| |||||| ||| ||| ||| ||| | ||| Sbjct 23971 GGCGAGCAGGCGCTGGAAATCTGCGACGCCCTCGTGCGGTCGGGC-AGC-GTCGACCTCG 24028 Query 64365 TCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGG 64424 | ||| | ||||| ||||| || ||| ||| ||||||||| ||||||||||||| || | Sbjct 24029 TTGTCATCGACTCCGTGGCCGCACTGACGCCACGCGCCGAGATCGAAGGCGACATGGGTG 24088 Query 64425 ACAGTCACGTC--GGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 64482 | || | | |||||||| |||||||| |||||||| || |||||||||| ||||| Sbjct 24089 AT--TCCCTGCCGGGCCTGCAAGCGCGCCTGATGTCGCAAGCGCTGCGCAAGCTGACCGG 24146 Query 64483 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 64542 ||||| | |||| || || ||| ||| |||||||| | ||| ||||||||| Sbjct 24147 TTCCATCAACCGCACGAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGG 24206 Query 64543 CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 64602 | || | | ||||| || |||||||| |||||||| || ||| |||||||| Sbjct 24207 CGTGATGTTCGGCAGCCCG---GAAACCACCACCGGCGGCAATGCCCTGAAATTCTACGC 24263 Query 64603 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 64662 || || ||| |||| |||| |||| || | | ||| |||||||| | |||| Sbjct 24264 GTCCGTGCGCCTGGACATCCGCCGCACCGGCTCGATCAAGTCCGGCGATGAAGTGATCGG 24323 Query 64663 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCG--CACCGCAACGCC 64720 |||| ||| ||| |||||||||||||||||| | || || ||| || | | ||| Sbjct 24324 CAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGC- 24382 Query 64721 GAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCC 64780 | ||| | || ||||||| | |||| ||||| || | |||| |||| ||||||| Sbjct 24383 -ACTTCGACATCCTGTACGGCGCCGGCACGTCGCGCGAAGGCGAAATCCTGGACCTGG-- 24439 Query 64781 GTGTCGCAGGGC---CTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAAC 64837 || ||| | | | | ||| |||| || || | |||| || ||| | | |||| Sbjct 24440 GT-TCGGACGCCAAGATCGTGGAGAAATCCGGTTCGTGGTACAGCTACAACGGC--GAAC 24496 Query 64838 G--TCGCCCAGGGCAAGCCCAAGGCC 64861 | ||| |||||||||| ||| ||| Sbjct 24497 GCATCGGCCAGGGCAAGGACAACGCC 24522 >seq211 Length=76543 Score = 269 bits (298), Expect = 1e-67 Identities = 541/798 (68%), Gaps = 13/798 (2%) Strand=Plus/Plus Query 64065 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 64124 |||| |||||| | | ||||||| ||| || ||||| || || || | ||||| Sbjct 35751 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 35810 Query 64125 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 64184 | || || |||||||| || |||||||| || || | || ||| || | | | | Sbjct 35811 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTG 35870 Query 64185 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 64244 || | || || || || | || | || | | |||| || |||||| ||||||| | Sbjct 35871 CCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATC 35930 Query 64245 CTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGA 64302 |||| |||||| ||| ||| || || || | ||| |||| |||| || ||||| Sbjct 35931 CTGAATACGCC--GGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGA 35988 Query 64303 CACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCAT 64362 ||| || ||||| || ||||| ||| ||| | || || || || | | | Sbjct 35989 CACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGACGT 36048 Query 64363 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 64422 |||| || ||||| ||||| |||||||| || || || |||||||||| || || Sbjct 36049 GATCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGG 36108 Query 64423 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 64482 |||| ||||| ||||| || || ||| | ||||| |||||| |||| || ||||||| Sbjct 36109 CGACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGG 36168 Query 64483 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 64542 | |||| | | ||||| || | ||| |||||||| | || ||||||||| Sbjct 36169 TAACATCAAGAACGCCAACTGCTTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGG 36228 Query 64543 CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 64602 | || | | ||||| || |||||||| || || || || ||| ||||||||| Sbjct 36229 CGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCTACGC 36285 Query 64603 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 64662 || ||||| |||| ||||||| | | | | | ||||||||| || |||| ||| || Sbjct 36286 TTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGG 36345 Query 64663 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGA 64722 | | ||||| || || ||||| ||||||||| ||||||||||| ||| | ||||| Sbjct 36346 TAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGA 36405 Query 64723 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 64782 |||| | | ||||| |||| |||| | | | ||| | ||||||||| ||| Sbjct 36406 GTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGATCGACCTGGGCGT 36465 Query 64783 GTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT---TCAAGTACGGGGACAAGAACGT 64839 | ||| || | || |||| || || ||||||| | | |||| ||||| | Sbjct 36466 GCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACGGCAGCAAGA---T 36522 Query 64840 CGCCCAGGGCAAGCCCAA 64857 || |||||||||| |||| Sbjct 36523 CGGCCAGGGCAAGGCCAA 36540 >seq7489 Length=570 Score = 255 bits (282), Expect = 3e-63 Identities = 395/560 (71%), Gaps = 13/560 (2%) Strand=Plus/Plus Query 64172 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 64231 || ||||| || |||||||| ||| ||| |||| ||| || | ||||||||| ||| Sbjct 11 CTGCACGCAGTTGCCAATGCTCAGGCCAACGGCGGCATCGCGGCGTTCATCGACGCGGAG 70 Query 64232 CACTCCCTGGACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGG 64289 ||| | || || || || || || || | ||| || || || ||| ||| ||| Sbjct 71 CACGCACTCGATCCCGACTATGC--AGCCAAGCTGGGCGTCGATACCGATGCACTCCTGG 128 Query 64290 TGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTG 64349 | ||||||||||| || ||||||||||| || ||| ||| | || || || | Sbjct 129 TCTCGCAGCCGGACACGGGTGAGCAGGCCCTCGAAATCACCGACATGCTGATCCGTTCAG 188 Query 64350 GCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 64409 ||| || ||||||||| | ||||| ||||| || || || || ||||||||| ||| Sbjct 189 GCGCCCTCGACATCGTCGTGATCGACTCCGTGGCCGCTCTTGTTCCTCGCGCCGAGATCG 248 Query 64410 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 64469 ||||||| || || ||||| |||||||| |||| || || || ||| ||||| ||| Sbjct 249 AAGGCGAGATGGGTGACAGCCACGTCGGTTTGCAGGCTCGACTGATGAGCCAGGCGCTGC 308 Query 64470 GCAAGCTCACCGGCACCATCTCCAGCAC---CAACACGCTGACGCTCTGGGTCAACCAGT 64526 ||||| ||||||| |||| || | | || ||| | | ||| |||||||| Sbjct 309 GCAAGATCACCGGTGCCATGAACAACTCGGGCACCACCGTCA---TCTTCATCAACCAGC 365 Query 64527 TGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGG 64586 | |||||||||||||| ||| | ||| | ||| |||||||| || || |||| Sbjct 366 TTCGCGAGAAGATCGG---TGTGATGTTCGGTTCTCCCGAAACCACCACCGGTGGTAAGG 422 Query 64587 CTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAG 64646 | ||| ||||||||| || |||||| | || ||||||| |||| || ||||| | Sbjct 423 CACTGAAGTTCTACGCTTCGGTCCGCCTCGACATCCGTCGTATCGAAACTCTCAAGGACG 482 Query 64647 GCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGC 64706 | || || || || |||||||| || || |||||||||||||||||| | || |||| Sbjct 483 GTACCGACGCAGTGGGTAACCGCACTCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGC 542 Query 64707 CGCACCGCAACGCCGAGTTC 64726 || | | ||||||||| Sbjct 543 CGTTCAAGCAGGCCGAGTTC 562 >seq4107 Length=847 Score = 100 bits (110), Expect = 1e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 64565 GAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGT 64624 || ||||| ||||||||||| || ||| ||||| || || || || | ||| |||| Sbjct 30 GAAACCACGACGGGCGGCAATGCGCTGAAATTCTATGCTTCGGTGCGTCTCGATATCCGC 89 Query 64625 CGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTC 64684 ||||||| | ||||||| | || |||| |||||||||| ||||| || ||||| Sbjct 90 CGCATCGGTGCGCTGAAGGAACGTGACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTG 149 Query 64685 GTCAAGAACAAGCTGGCCCCGCC 64707 |||||||||||||| || || || Sbjct 150 GTCAAGAACAAGCTTGCGCCCCC 172 >seq1862 Length=5913 Score = 95.1 bits (104), Expect = 6e-15 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 58445 GACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCG 58504 |||||||| || ||| | || |||| |||||||||||| || ||||||||||| ||| Sbjct 5330 GACGGCGATGCGCTGTTCATGCGTTGCAACATCTGGCGCGAAGCAGCCGAGAACGTCGCG 5389 Query 58505 GAAAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 58562 || ||| | || | || || || |||||| ||| ||||||||||| || | Sbjct 5390 GAGAGCTTGACCCG--TGGTTCACGAGTAATCGTGAGCGGCCGGCTCAAGCAGCGTTCGT 5447 Query 58563 TCGAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 58622 ||| || |||||||| ||||| || ||| ||||| | || || || || ||||| | Sbjct 5448 ACGAAACTCGCGAGGGCGAAAAGCGAACTGTCGTCGAGCTCGAAGTCGATGAAATCGGTC 5507 Query 58623 CGTCGCTG 58630 | || ||| Sbjct 5508 CTTCACTG 5515 >seq1863 Length=4856 Score = 82.4 bits (90), Expect = 4e-11 Identities = 142/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 49599 CAACCACCCCAGGACCTAGCCGCCGAGTCAG-CAGTCCTCGGCGCCATGCTTCTCTCCAA 49657 || ||||| |||||| | | |||||| ||| | || ||||||| |||||| || ||| Sbjct 3709 CAGCCACCTCAGGACATGACTGCCGAG-CAGTCGGTGCTCGGCGGCATGCTGCTGAGCAA 3651 Query 49658 GAACGCCACCCCGGCCGTCATGGAGATTCTCAAGCCCGAGGACTTCTACCGCCCCAACCA 49717 | |||||| | | | |||| | ||| | || || | ||||||||||| ||| || Sbjct 3650 GGACGCCATCGCTGACGTCCTCGAGGTACTGCGTCCGGGTGACTTCTACCGGCCCGCTCA 3591 Query 49718 CGCCACCGTCTACCAGATCATCACCGACCTCTACATGGCC--GGTGAGTCCGCCGACGTC 49775 | |||||||| | | ||| |||||||||| ||| || ||| |||||||| Sbjct 3590 CCAGTCCGTCTACGACGTGATCCTGGACCTCTACA--GCCGTGGCGAGCCCGCCGACCCG 3533 Query 49776 ATCACCGTCGCCGCGGAGCTCG 49797 | || ||| |||| ||||||| Sbjct 3532 GTGACGGTCTCCGCCGAGCTCG 3511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232763463767555