Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq2405 643 4e-180 seq845 161 3e-35 seq26 145 2e-30 seq11514 89.7 2e-13 >seq2405 Length=2039 Score = 643 bits (712), Expect = 4e-180 Identities = 1380/2028 (68%), Gaps = 56/2028 (3%) Strand=Plus/Plus Query 39429 TGTGTGAGCCAACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCT 39488 |||| | | | || |||||||| ||||| || |||||||| | | |||| |||||| Sbjct 14 TGTGGGCGTCCACACCCATCGGTCCCGGTCGATACAGCGCCAAGGCGGCGACGATGTCGC 73 Query 39489 CGAAGTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTGGA 39548 |||| | ||||| || ||| |||| |||||| | |||||||||||||||| Sbjct 74 CGAATCCGGTGGGCTGCATCAGTTTCAGCAACTCGCGCATACCGCCGCCGTCGAGCTGGA 133 Query 39549 ACACCGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGGA 39608 |||| ||| |||||||| ||| ||||| ||||| || | || ||||||| ||| | Sbjct 134 ACACACCGAGAGTGTCACCGCGGGCGAGCAGTTCGTATGTTGCCGCATCGTCCATCGGCA 193 Query 39609 TGTTCTCCAGGTCGACGTGCTCCCCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCA 39668 | || ||||||| || || ||||| ||||||||||| | |||||| | Sbjct 194 AAGTGTCGAGGTCGAGGTCGATGCCGCGGTTGGCTTTGATGTTCTCGAGCGTGTCGCCGA 253 Query 39669 TGATCGTGAGGTTCCGCAGGCCGAGGAAGTCCATCTTGACCGCGCCCATGCTCTCGCACT 39728 ||| ||||||||| ||||| ||||||||||||||||||| | ||| ||| || ||| Sbjct 254 TGACCGTGAGGTTTCGCAGACCGAGGAAGTCCATCTTGAGCAGGCCGATGGCTTCACACG 313 Query 39729 GGGGGTAGTCCCACTGCGTGACGGTGACGCCGTCCGCAGGACGGACCCACACCGGAAGGT 39788 |||||||||||| |||| | | |||||||| | || ||| ||||| | Sbjct 314 AAGGGTAGTCCCACCCGGTGATGATTGCGCCGTCCTGGGCGCGCTTCCAGACCGGGATTG 373 Query 39789 GATCGACCAGGGGCTCGTTGGACATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAA 39848 ||| || || ||| |||||||| || || |||||||| || | || | Sbjct 374 CGTCGGTGAGCGGTTCGGACGACATGATGACCGCGCAGGCGTGCACACCGGCGTTACGGA 433 Query 39849 CCAGACCTTCGAGCCCGAGCGCAGTGTCGATCACCTCCTTCGA-GTCCTTGTCGTTCTCG 39907 ||| || || || || | |||||| | | | || | ||| |||| | | ||| Sbjct 434 TCAGCCCCTCCAGACCCACCGCAGTCTTGTAGATCTTCG-CGACGTCCGGGCTGGAGTCG 492 Query 39908 TACAGGCCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATCCCC 39967 || | || | |||| | ||||| | ||| ||| ||||| ||| | | ||| || Sbjct 493 ATGAGTGCTCGAACCTCGACGGCCTCCTTGTACCGCTCGTGCTTCGGATCGGTGATACCG 552 Query 39968 TCCAGGGGCATCGACGCGCCCATCACATCGGC--CGGGTACGCCTTGGTCAGCTTCTCGC 40025 | | || | | |||| | | ||| |||| |||||||| | || ||| Sbjct 553 GAGACAGAGATGTCCTTGGCCATGA--TGGGCGGCGGGAGTGCCTTGGTGATCTGATCGG 610 Query 40026 CGACCTGGAAG---GGCTTGTCCAGC---ACGCGGGCCGCGTCCTTCATCGCG---TTGC 40076 ||| |||| |||||| | | | ||||| |||| |||||| || || ||| Sbjct 611 CGATGGCGAAGCCCGGCTTGCCGAACTGGACGCGAGCCGAGTCCTTGATGGCAGCCTTG- 669 Query 40077 GCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCG--GCCCCGTACTTCTC 40134 | |||||| ||||||||| || ||| |||||||||||| ||||| |||| || Sbjct 670 --GTCTTGATGGTGCCGAAGGTGATGACCTGGGCGACCTTGTCGTTGCCCC--ACTTGTC 725 Query 40135 GGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGG 40194 || |||| || | | |||||||||||| || |||||||||||||| || | ||||| Sbjct 726 CGTCGCGTAGCGAACCATCTCGCCGCGACGGCGATCATCGAAGTCGATATCGATATCGGG 785 Query 40195 CATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATC 40254 ||||||||| ||||||||||| ||||| |||||||| | | ||||| | | || || Sbjct 786 CATGGACACACGCTCGGGGTTGAGGAATCGCTCGAACAGCAACCCGTACGGGATGGGGTC 845 Query 40255 GAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGG 40314 || || |||||| || | |||||| |||| ||||||||| ||||| || || || || Sbjct 846 GATGTTGGTGATACCCATCGCGTAGGCCACCAACGAACCGGCAGCCGATCCACGGCCGGG 905 Query 40315 ACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTA 40374 ||||| | | ||| |||||||| | ||| | |||| |||| || |||||||| Sbjct 906 CCCGACACGGATCCCGACGTCCTTGGCGTGGTTGATCAGGTCGCCGACCACGAGGAAGTA 965 Query 40375 GGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT-GGAGCTGCTTGCCGTGCT 40433 || |||||||||||| | | |||| | | |||||||||| | || || | | || || Sbjct 966 GGCCGGGAAGCCCATTTCGTTGATGACGCCGATCTCGTAGTCGGCGC-GGGCGAGGTACT 1024 Query 40434 CGT-AGTCGGTCCCGTTCGGGAACCGTCGAGCTGCCCCACGGTGGACCTCGTCCTCGAAC 40492 | | | |||| ||| ||||||| || ||| | || || |||||| | | Sbjct 1025 CCTGCGGCGGT-CCGCTCGGGAAGCGGCGATCGAGTCCGCGCATCACCTCGGCGCGCAGG 1083 Query 40493 CAGGTCACCTCCGTGTGCCCCTCGGGCACCGGGAAGCGAGGCATGAGGTC--GGTGTGCT 40550 ||||| || |||||| ||||| || ||||| ||| |||||| |||| || || Sbjct 1084 AAGGTCTGCTGCGTGTGTCCCTCCGGGACCGGAAAGATCGGCATGCGGTCGTGGAACGCC 1143 Query 40551 CGAACATGCCCGT-CGTGTCGACACGCTCGGCGATCTCCAGCGTGGT-CCGCAT-CCCCC 40607 | || | | ||| || | ||||||||| |||| | | ||| | ||||| ||||| Sbjct 1144 CACACGTCCTCGTACGACTGCACACGCTCGCCGATGGCAACGGTGTTGTCGCATGCCCCC 1203 Query 40608 ACT-CCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGTCTTGATGTAGTAC 40666 | || | || | |||||| ||||||||| || | ||||| |||||| Sbjct 1204 GGTACCTCGTTGTCCCA------GATGGCGCGCATCTCGGCAGCGGACTTGAGGTAGTAG 1257 Query 40667 CCGGAGCCCTCGAACCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGCAG 40726 ||| ||| |||||| |||||| | |||| | |||||| |||||||||| | |||| Sbjct 1258 CCGTCGCCGTCGAACTTGAAGCGAGTGGGGTCGGAGAGCGTCTTGCCGGTCTGAATGCAG 1317 Query 40727 AGTAGGGCATCGTGCGCCTTGCTCTCGTCGGCCGTGACGTAGTGGCTGTCGTTGGTGACC 40786 || || || ||||| || | |||| |||||||| |||| |||||||||| | Sbjct 1318 AGCAGCGCCTCGTGATTCTCGGCGGCGTCCTTGGTGACGTAATGGCAGTCGTTGGTGGCA 1377 Query 40787 ACCGGGGTGAGCGCGAGGTGCTTGCCCA-GCCGGTAG-AGGTCGTCGCGGACGCGCCGCT 40844 | || | | |||| |||||||| | | || || || | || || || || |||| Sbjct 1378 AGTGGCGGAATACCGAGTTGCTTGCCGATGTCG--AGCAGACCCTCTCGCACACGGCGCT 1435 Query 40845 CGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACCGGTCACGACCGAACACCTCCA 40904 ||||| || ||||| ||||| | || |||||| | ||| | || | | |||| Sbjct 1436 CGATCGAGAGACCGTGATCCATCAGTTCGAGGAAGAAGTTGTCCGGGCCCCAGATCTCCT 1495 Query 40905 GGTAC--CG-GCCAGCCTCCGCAACGGCCTGGTCGTACTGCCCGAGGTTGAGCCGGGTCA 40961 | || || | |||| | | | |||| | | || ||||| || |||||| Sbjct 1496 GCCACTTCGCGGCAGCTT---CGAGAGCCTCGCGATCGTGACCGAGACGAAGGCGGGTCT 1552 Query 40962 TGATCGCACCGCCAGGGCAGCCCGTGGTGACGATCAGGCCCTCGTTGTGCTCGGCGACGA 41021 |||| ||||| ||||| |||||||| |||| | ||||||| |||| |||||| || Sbjct 1553 GGATCTCACCGGACGGGCAACCCGTGGTCGCGATGATGCCCTCGGCGTGCGCGGCGATGA 1612 Query 41022 GGTCGAAGTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCTTGGTACGACCGAGAGCTG- 41080 | || |||||| || || | || |||||| ||||||| | ||| |||| | | Sbjct 1613 GCTCCTCGTCCATCCGTGGCCATTTACCGAGCTGGCCCTCGATGGACG--CGAGCGACGA 1670 Query 41081 -AGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCTCGGCGAGGATCGTGAGGTGGGTGTA 41139 ||||| | ||||||| | || |||||| ||||||||| | ||||| | ||||||||| Sbjct 1671 CAGCTTGAAGAGGTTGCGGAGTCCGGTCGCGTTCTCGGCCACCATCGTCATGTGGGTGTA 1730 Query 41140 CGCACCGCGACCGCTCACGTCGTAACGCTTCTGGTCCTCGGT-GCCCCACTGCACCCGCT 41198 |||||||| |||| ||||||| ||||||| | || | |||||| | || |||| Sbjct 1731 CGCACCGCTACCGGAGACGTCGTCGGACTTCTGG-CTGCGATCTCCCCACAGAACTCGCT 1789 Query 41199 CCTGATCGAAGCGCGAGCCCGGAGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCC 41258 | |||||| || | || || ||||| ||||||||||||||||||||||||| | Sbjct 1790 TGGTGTTGAAGCGAGACTCGGGTGCGATGTAGGCCTCGATGCCGATGATCGGCTTGATGC 1849 Query 41259 CAGCGGCCGTAGCTGTGGTGAAGAAGTCGTGCGCACCGTGCAGGTTGCCGTGGTCGGTGA 41318 | ||| | | || | || |||| | | || |||| || ||| ||||||||||| | Sbjct 1850 CGGCGCTCTTTGCCTCGTTGTAGAACTGGCTGGCGCCGTACATGTTTCCGTGGTCGGTCA 1909 Query 41319 CGGCGACTGCCGGGGAGCCCTGGCGGGCGACCTCGGCGACCATCTGCTTC-ATCCGAGCG 41377 | ||||||| | | | || ||| |||| ||| ||| || | | | || Sbjct 1910 TGCCGACTGCGGTCATTTCGAGACGAGCGGCCTCCTCGAACAT-GGCGCCGACCTTGGCC 1968 Query 41378 GCCCCGTCGAGGAGGCTGTACTCGGAGTGGTTGTGGAGGTGAACGAAC 41425 || |||||||| | |||||||| ||| ||||| || || |||||| Sbjct 1969 GCACCGTCGAGCATCGAGTACTCGGTGTGATTGTGAAGATGTACGAAC 2016 >seq845 Length=90334 Score = 161 bits (178), Expect = 3e-35 Identities = 246/347 (71%), Gaps = 10/347 (3%) Strand=Plus/Minus Query 40042 GTCCAGCACGCGGGCCGCGTCCTTCATCGCG---TTGCGCGCCTTGATCCGGCCGAAGGT 40098 ||||| ||||||| || |||| |||||| ||| |||| || | | ||||||| Sbjct 48173 GTCCATCACGCGGCCCACGTCGCGGATCGCGCCCTTGGCCGCCATGGTAC---CGAAGGT 48117 Query 40099 CCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCC 40158 ||||||| | |||| || || ||| || |||||| | | ||||| | | Sbjct 48116 GGCGATCTGCGAGACCGCCTCCTTGCCATACAAATCCTTGACGTGCTGAATGACGCGGTC 48057 Query 40159 GCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTC 40216 ||| | || | || ||||| || || | ||||||||| || ||||| ||||| ||| Sbjct 48056 GCGCCCTTCCTGGCAA--AAGTCAATATCGAAGTCGGGCATCGAGACGCGTTCGGGATTC 47999 Query 40217 AGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAG 40276 ||||| |||||||| | || || | || ||||||||||||||| || || | Sbjct 47998 AGGAAGCGCTCGAACAGCAGGTTGTATTGCAATGGATCGAGGTCGGTAATGAGCAGCGAA 47939 Query 40277 TAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCC 40336 || || |||||||||||||| |||| || || || |||||||| ||||||||| ||| Sbjct 47938 TACGCCACCAGCGAACCGGCGCCCGAACCGCGGCCCGGACCGACGGGCACGCCGTTTTCC 47879 Query 40337 TTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAA 40383 |||||||| ||| || ||||| |||| ||||||||| ||||| Sbjct 47878 TTGGCCCACTGGATAAACTCGGCCACGATGAGGAAGTAGCCGGGGAA 47832 Score = 118 bits (130), Expect = 3e-22 Identities = 401/621 (65%), Gaps = 53/621 (9%) Strand=Plus/Minus Query 39022 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 39081 ||| |||||| | |||||| || ||||| |||| || |||||| |||| | | || Sbjct 49154 GGCGGCCATGAAGGCGGCCGTGTGGTGCGCTTTCAAATAGGCCGTGTGGTACGACAGCAG 49095 Query 39082 CCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 39141 |||| || || | ||||| |||||||| |||| |||||||| | | | || ||| Sbjct 49094 GGCGTAGGCGGCGGCGTGCGATTTGTTGAAACCGTAGCCGGCGAACTTTTCCATCAAGTC 49035 Query 39142 CCACACCGCCTGGATGGCGCTGTCCGA-GT--AGCC-TCGCTCGCGCGCTCCCTTCTGGA 39197 | | | | | | || | |||| || |||| || |||| ||| || ||| Sbjct 49034 GAAGATCTCGTCG---GCTTTTTCCGCCGTCAAGCCATCTTTCGC-CGCACCGGCGCGGA 48979 Query 39198 AGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCA 39257 || || || | || ||||| | |||| |||||| || |||||||| || ||||||| Sbjct 48978 AGATCTCGCGGTGCTCGGCCATCTCTTCGGCCTTCTTTTTACCCATGGCGCGGCGCAGCA 48919 Query 39258 GGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCT 39317 |||||| |||||| |||||| ||| |||||||||| || | ||||||||||| Sbjct 48918 TGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCTCCT 48859 Query 39318 GGTAGATGATGAGCCCGTACGTCGGGTCCAGGATC--TCCCGCAGGGGCTCCTCCACCTC 39375 | || | |||| ||||| || | ||| ||| | ||| | || || Sbjct 48858 GATACACCATGATGCCGTAGGTTTCGGACAGAATCGATTCCG--TGCGCGGATC------ 48807 Query 39376 GGGGTGAATCGGCGAGATCGCC-TGCTGTCCATTCTTCCGGAGGGCATAGTTCGTGTGTG 39434 ||| ||||| | | ||||| |||| | || ||| | ||| | | Sbjct 48806 -GGGATAATCGAAGCGTTCGCCGTGCTTGCGCTT----------GCAGAAATCGGGAATC 48758 Query 39435 AGCCAACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGT 39494 || | ||||||||||||||||||||||||| |||| || ||||| |||||| Sbjct 48757 AG-----GTCCATCGGACCCGGACGGTACAGCGCCACGAGCGCGATAATGTCTTCGAAGC 48703 Query 39495 TGTCGGG---------CTTCAGCAGGCGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCT 39545 |||||| ||||||| || ||| | |||| | || |||| Sbjct 48702 GGTCGGGACGCGCGTCTTTCAGCATGCCCTGCATGCCGCGCGAC---------TCCAGCT 48652 Query 39546 GGAACACCGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCG 39605 ||||||| | | || | |||||| ||||| || || | ||| ||||| ||||| Sbjct 48651 GGAACACGGCCACGGTCTTGGCCTTGGTCAGCAAGTCATACGACGGCTTGTCGTTCAGCG 48592 Query 39606 GGATGTTCTCCAGGTCGACGT 39626 | | | || ||||||||| || Sbjct 48591 GCAGGGTCGCCAGGTCGAAGT 48571 >seq26 Length=69211 Score = 145 bits (160), Expect = 2e-30 Identities = 208/291 (71%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 40123 CCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACG--CCGGTCATCGAAGTCG 40180 |||||| ||||||| |||||| || ||| | |||||| || || ||||||| Sbjct 42600 CCCGTATTTCTCGGCCACGTACTCAATAACCCGGTCGCGACCATCCATGCA--GAAGTCG 42543 Query 40181 ATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCG 40240 | ||| | ||||||||| || || || || ||||| ||||| || ||||| | || | Sbjct 42542 ACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAGCAGGTCA 42483 Query 40241 TGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCC 40300 | ||||| || ||||||||||||||| | ||||| |||||||| ||||| || Sbjct 42482 TATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCCGGCACCC 42423 Query 40301 GAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCG 40360 || || || || || || || ||||||||| |||||||| ||| ||||| Sbjct 42422 GATCCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAAGTCCATT 42363 Query 40361 ACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40411 |||| ||||||||| ||||| ||||||||||| || || || | |||| Sbjct 42362 ACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 42312 >seq11514 Length=332 Score = 89.7 bits (98), Expect = 2e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 38989 CTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTG 39048 ||||| ||||||||| || || ||||| |||| |||||||||||||||||||||||| Sbjct 244 CTTGTCCTTGTCGTCACCGACGGAGGTCAGCAGACCCGCCATGTACTCGGCCGGGTAGTT 303 Query 39049 CGTCTTCAGGTACGCCGTGCGGTA 39072 || ||| |||||||| || | ||| Sbjct 304 CGCCTTGAGGTACGCAGTCCAGTA 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160379722911870