Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq582 147 9e-31 seq5362 145 3e-30 >seq582 Length=79996 Score = 147 bits (162), Expect = 9e-31 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 54586 CGCCAGCATGCCGTTCGTGTATCCGCACGTCGCACTCATGCCCGACGCACATTTCGGCAA 54645 ||||||| |||| |||| ||||||||||| | ||||||||||| ||| ||||| Sbjct 74539 CGCCAGCCTGCCCATCGTTTATCCGCACGTGGTGGCCATGCCCGACGTGCATGCCGGCAT 74598 Query 54646 AGGCAGCTCGGTCGGCACAGTCATCCCCACCCAAGGCGCCGTCATCCCGGCCGCCGTCGG 54705 ||| | | ||||||| || || ||||| | ||||||||||||||||||||||| || Sbjct 74599 CGGCGCCACCGTCGGCAGCGTGATTCCCACGCGCGGCGCCGTCATCCCGGCCGCCGTGGG 74658 Query 54706 CGTCGACATCGGCTGCGGCATGATCGCAGCCCGCACCACCT 54746 ||||||||||||||||||||||| ||| | ||||| |||| Sbjct 74659 CGTCGACATCGGCTGCGGCATGAACGCCGTGCGCACGACCT 74699 >seq5362 Length=3136 Score = 145 bits (160), Expect = 3e-30 Identities = 345/519 (66%), Gaps = 27/519 (5%) Strand=Plus/Minus Query 54959 CAGCTCGGAACACTCGGCGGCGGCAACCATTTCATTGAACTGTGCCTCGACCAGCTCGAC 55018 ||||||||||| || ||| || ||||| ||||| || || ||||| | |||| Sbjct 562 CAGCTCGGAACGCTGGGCTCTGGTAACCACTTCATCGAGGTGACACTCGATGAAAGCGAC 503 Query 55019 CGCGTCTGGCTGTTCCTGCATTCCGGGTCTCGTGGTGTCGGCAACAAGATCGCGCAGAAA 55078 ||||||||||||||||||| || || || ||| |||| |||||| |||||||| | Sbjct 502 GGCGTCTGGCTGTTCCTGCACTCGGGAAGCCGCGGTATCGGAAACAAGCTCGCGCAGCAT 443 Query 55079 CACATCAAGGCCGCCCAGAACGCCTGCGAGGG------CATCGAACTGCC--GTCCAAGG 55130 ||||||||| |||| || || |||||| | |||| | || || ||| || Sbjct 442 CACATCAAGATCGCCAAGGACTTGTGCGAGCGGTGGTACATCAACCTTCCCGATCC--GG 385 Query 55131 ATCTGGCGTACCTCACCGAAGGCACACCCCAATTCTACGAGTACCTACGTGAACTGCATT 55190 |||| || ||||| ||| |||||| ||||| || |||| | || || | | Sbjct 384 ATCTTGCCTACCTGGTCGAGAAGACACCCGAATTCGACTCGTACATCACCGATCTCAACT 325 Query 55191 GGGCGCAACGATTCGC-GTACTCGAACCGCGCCGAAATGATGGACCGGTTCGCGCGCGCA 55249 |||| || | ||||| | ||| ||||||| || ||||||||||| ||| | | Sbjct 324 GGGCTCAGCACTTCGCTTTGCTC-AACCGCGAAGAGATGATGGACCGCGTCGTGAAGGAC 266 Query 55250 TTCGCGAACTGGATCGGCACACCCGTCGACGACGTCTCAGCGTTCATCGCCGAAACC--- 55306 |||||| | | || || |||| | | ||| |||||| |||| | Sbjct 265 TTCGCGCATTTCATGGG---------AGACGGCAAGCCCGCGATCATCGACGAAGTCGAG 215 Query 55307 ---ATCAACACCCACCACAACTACACCGAGCAGGAAGAACACGGCGGCCGGTTCGTGTGG 55363 |||||| ||||||||||| |||| || |||| ||| ||| || |||||| Sbjct 214 CGGATCAACTGCCACCACAACTTCACCCAGAAGGAGTTCCACATGGGCAGGGGTGTGTGG 155 Query 55364 CTCACCCGCAAAGGCGCCATCGACGCACACGAAGGTGTGCGTGGCCTCATCCCCGGCAGC 55423 || | ||| || || || ||| | ||| |||| || || || ||||||||||| Sbjct 154 CTGAGCCGTAAGGGTGCGATCAAGGCAAACGAGGGCACGCCCGGGCTCATCCCCGGTTCG 95 Query 55424 ATGGGCACCTGCTCATACGTCGTCACCGGCAAAGGCAAC 55462 ||||| || ||||||||| ||| || || ||| Sbjct 94 ATGGGGACGGCGAGTTACGTCGTCGTCGGGAAGGGAAAC 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196680884684130