Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq2405 657 0.0 seq845 104 7e-18 seq26 100 9e-17 seq11514 93.3 1e-14 >seq2405 Length=2039 Score = 657 bits (728), Expect = 0.0 Identities = 1373/2023 (68%), Gaps = 48/2023 (2%) Strand=Plus/Plus Query 38336 TGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCT 38395 |||| | | ||| |||||||| ||||| || |||||||| | | |||| |||||| Sbjct 14 TGTGGGCGTCCACACCCATCGGTCCCGGTCGATACAGCGCCAAGGCGGCGACGATGTCGC 73 Query 38396 CGAA-CTGGTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGG 38454 |||| | ||| |||| || ||| |||| |||||| ||||||||||||||||| Sbjct 74 CGAATCCGGTG-GGCTGCATCAGTTTCAGCAACTCGCGCATACCGCCGCCGTCGAGCTGG 132 Query 38455 AAGACCGAGAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGCGGG 38514 || || ||| ||||| || | ||| ||||| ||||| ||||||| ||||||| ||| Sbjct 133 AACACACCGAGAGTGTCACCGCGGGCGAGCAGTTCGTATGTTGCCGCATCGTCCATCGGC 192 Query 38515 ATGTTCTCGATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCC 38574 | | |||| ||||| || || |||||| ||||||||||| || |||||| Sbjct 193 AAAGTGTCGAGGTCGAGGTCGATGCCGCGGTTGGCTTTGATGTTCTCGAGCGTGTCGCCG 252 Query 38575 ATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGGGCCTCGCAG 38634 |||| ||||||||| || || ||||||||||||||||| |||||||| | ||| || || Sbjct 253 ATGACCGTGAGGTTTCGCAGACCGAGGAAGTCCATCTTGAGCAGGCCGATGGCTTCACAC 312 Query 38635 CTCGGGTAGTCGAACTGCGTGATCGTCACGCCGTCCGCAGGCCGCACCCACGTAGGGATG 38694 |||||||| || ||||| | |||||||| | ||| ||| ||||| Sbjct 313 GAAGGGTAGTCCCACCCGGTGATGATTGCGCCGTCCTGGGCGCGCTTCCAGACCGGGATT 372 Query 38695 TGGTCGACCAGCGGCTCGTCAGACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGG 38754 |||| ||||| ||| |||||||| || || |||||||| || | ||| Sbjct 373 GCGTCGGTGAGCGGTTCGGACGACATGATGACCGCGCAGGCGTGCACACCGGCGTTACGG 432 Query 38755 ACGAGTCCTTCGAGGCCACGCGCGAGGTCGATGACCTCCTTCGCGTCCTTGTCGTTCTCG 38814 | || || || || || ||| | | || || | ||||| | | ||| Sbjct 433 ATCAGCCCCTCCAGACCCACCGCAGTCTTGTAGATCTTCGCGACGTCCGGGCTGGAGTCG 492 Query 38815 TACAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCC 38874 || || || | |||| | ||||| | ||| ||| ||||| ||| | |||||| || Sbjct 493 ATGAGTGCTCGAACCTCGACGGCCTCCTTGTACCGCTCGTGCTTCGGATCGGTGATACCG 552 Query 38875 TCCAGGGGCATCGACGCGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCG 38934 | | || | | |||| | | | |||| |||||||| | || ||| || Sbjct 553 GAGACAGAGATGTCCTTGGCCATGATGGGCGGCGGGAGTGCCTTGGTGATCTGATCGGCG 612 Query 38935 ACCTGGAAG---GGCTTGTCCAGC---ACGCGGGCCGCGTCCTTCATCGCG---TTGCGC 38985 | |||| |||||| | | | ||||| |||| |||||| || || ||| Sbjct 613 ATGGCGAAGCCCGGCTTGCCGAACTGGACGCGAGCCGAGTCCTTGATGGCAGCCTTG--- 669 Query 38986 GCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTG 39045 | |||||| ||| | || || ||| ||||||||||| |||| |||| || || Sbjct 670 GTCTTGATGGTGCCGAAGGTGATGACCTGGGCGACCTTGTCGTTGCCCCACTTGTCCGTC 729 Query 39046 ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATG 39105 |||| || | || ||||| || || || |||||||||||||| || | ||||||||| Sbjct 730 GCGTAGCGAACCATCTCGCCGCGACGGCGATCATCGAAGTCGATATCGATATCGGGCATG 789 Query 39106 GAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGG 39165 || |||||||| ||||| ||||| |||||||| | | ||||| ||||||||||| | | Sbjct 790 GACACACGCTCGGGGTTGAGGAATCGCTCGAACAGCAACCCGTACGGGATGGGGTCGATG 849 Query 39166 TCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCG 39225 | |||||| || | ||||| || ||| ||| || || || || || || || || ||| Sbjct 850 TTGGTGATACCCATCGCGTAGGCCACCAACGAACCGGCAGCCGATCCACGGCCGGGCCCG 909 Query 39226 ACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGAC 39285 || | | ||| ||||| || | ||| | |||| |||| ||||||||||| | | Sbjct 910 ACACGGATCCCGACGTCCTTGGCGTGGTTGATCAGGTCGCCGACCACGAGGAAGTAGGCC 969 Query 39286 GGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGACCTGCGTGCGGTGCTCGT-C 39344 ||||| ||||| | |||||| | | |||||||||| ||| | | | | ||| ||| | | Sbjct 970 GGGAAGCCCATTTCGTTGATGACGCCGATCTCGTAGTCGGCGCGGGCGAGGTACTCCTGC 1029 Query 39345 GTCGTACCCACCGGGGAAGCGGCGGTCCATGCCGATGAGCACCT--GCTCGC-GGAAGAA 39401 | || || |||| |||||||| || | ||| | ||||| || ||| ||||| Sbjct 1030 GGCGGTCCGCTCGGG-AAGCGGCGATCGAGTCCGCGCATCACCTCGGCGCGCAGGAAGGT 1088 Query 39402 CTGGCCCTCCGTCTGGCCCTCGGGCACCGGGAAGCGGGGCATGAGGTTCTGGAACTCGAA 39461 ||| || ||| || ||||| || ||||| ||| |||||| ||| |||||| | | Sbjct 1089 CTG---CTGCGTGTGTCCCTCCGGGACCGGAAAGATCGGCATGCGGTCGTGGAACGCCCA 1145 Query 39462 CATGCCG--GT-CGTGTCGACCCGGTCGGCGATCTCCAGCGTGGTC-CGCAT-CCCCCAC 39516 || | | || || | || || ||| |||| | | ||| | ||||| ||||| Sbjct 1146 CACGTCCTCGTACGACTGCACACGCTCGCCGATGGCAACGGTGTTGTCGCATGCCCCCGG 1205 Query 39517 TCCCA-GATGGGAGAGGAGTCGATGGCTGCCATCTCGGCGGCCGACTTCAGGTAGTACCC 39575 | || | || || ||||| ||||||||| || ||||| |||||||| || Sbjct 1206 TACCTCGTTGTCCCAG------ATGGCGCGCATCTCGGCAGCGGACTTGAGGTAGTAGCC 1259 Query 39576 CTCGCCCTCGAACCGGAACCGATCCTCCTGGTAGAGGGTCGAGCCGGTCTGGACGCACAG 39635 ||||| |||||| ||| ||| | | |||| ||| ||||||||| | ||| || Sbjct 1260 GTCGCCGTCGAACTTGAAGCGAGTGGGGTCGGAGAGCGTCTTGCCGGTCTGAATGCAGAG 1319 Query 39636 CAGGGCGTCGTGGGCC---GCAGCCTCCTCGACCCGCGT-GTAGTGCGAGTCGTTGGTGA 39691 ||| || ||||| | || || |||| | | | ||| || ||||||||||| Sbjct 1320 CAGCGCCTCGTGATTCTCGGCGGCGTCCTTG----GTGACGTAATGGCAGTCGTTGGTGG 1375 Query 39692 CCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTCGTCGCGGACGCGCCGCT 39751 | | || | | |||||| ||| |||| | | || | || || || || |||| Sbjct 1376 CAAGTGGCGGAATACCGAGTTGCTTGCCGATGTCGAGCAGACCCTCTCGCACACGGCGCT 1435 Query 39752 CGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGAAGATCTCCC 39811 ||||| || ||||| ||||| | || ||||||||||||||| || |||||||| Sbjct 1436 CGATCGAGAGACCGTGATCCATCAGTTCGAGGAAGAAGTTGTCCGGGCCCCAGATCTCCT 1495 Query 39812 GCCACTTCGCGGCCTCGGCGACGGCCTCCTCGTACTGGCCGAGGTTGAGCCGGGTC---A 39868 ||||||||||||| | ||| ||||| | || ||||| || |||||| | Sbjct 1496 GCCACTTCGCGGCAGCTTCGAGAGCCTCGCGATCGTGACCGAGACGAAGGCGGGTCTGGA 1555 Query 39869 TCACTGCGCCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGTGCTCCGCCACCA 39928 || | || || ||||| |||||||| |||| | |||||| |||||| | || | | Sbjct 1556 TCTCACCGG-AC--GGGCAACCCGTGGTCGCGATGATGCCCTCGGCGTGCGCGGCGATGA 1612 Query 39929 GCTCGGCGTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCGCTGTACGAGCGAGAGGAGA 39988 |||| ||||||| || || | || |||||| |||||||| || ||| | | || || | Sbjct 1613 GCTCCTCGTCCATCCGTGGCCATTTACCGAGCTGGCCCTCGATGGACGCGAGCGACGACA 1672 Query 39989 GCTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGTGGCGAGCATGGTCATGTGGGTGTAGG 40048 ||||||| |||||| | || |||||| |||| ||| | ||| |||||||||||||| | Sbjct 1673 GCTTGAAGAGGTTGCGGAGTCCGGTCGCGTTCTCGGCCACCATCGTCATGTGGGTGTACG 1732 Query 40049 CACCCCGACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCCCACTGGACCCGCTCCT 40108 |||| | |||| ||||||| |||||| | | |||||| | || |||| Sbjct 1733 CACCGCTACCGGAGACGTCGTCGGACTTCTGGCTGCGATCTCCCCACAGAACTCGCTTGG 1792 Query 40109 GGTCGGAACGGTGCCCCGGTGCGACGTACGCCTCGATCCCGATGATGGGCTTGACCCCAG 40168 || | | || | | ||||||| ||| |||||||| |||||||| ||||||| || | Sbjct 1793 TGTTGAAGCGAGACTCGGGTGCGATGTAGGCCTCGATGCCGATGATCGGCTTGATGCCGG 1852 Query 40169 CGGCCTGCCCCTGCGTGAAGAAGTCGTACGCACCATGCAGGTTGCCGTGGTCGGTCATCG 40228 || || ||| || |||| | | || || | || ||| |||||||||||||| Sbjct 1853 CGCTCTTTGCCTCGTTGTAGAACTGGCTGGCGCCGTACATGTTTCCGTGGTCGGTCATGC 1912 Query 40229 CGAGGGCTCTCATGCCCTGCGCCTTGGCCTCGGCGAACATGTCCTTCAGCCGAGCCGCCC 40288 ||| || |||| | | |||||| |||||||| | | | ||||| | Sbjct 1913 CGACTGCGGTCATTTCGAGACGAGCGGCCTCCTCGAACATGGCGCCGACCTTGGCCGCAC 1972 Query 40289 CGTCGAGCAGGCTGTACTCGGAGTGGACATGCAGGTGAACGAA 40331 ||||||||| |||||||| ||| || || || ||||| Sbjct 1973 CGTCGAGCATCGAGTACTCGGTGTGATTGTGAAGATGTACGAA 2015 >seq845 Length=90334 Score = 104 bits (114), Expect = 7e-18 Identities = 218/320 (68%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 37929 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 37988 ||| |||||| | |||||| || ||||| |||| || |||||| |||| | | || Sbjct 49154 GGCGGCCATGAAGGCGGCCGTGTGGTGCGCTTTCAAATAGGCCGTGTGGTACGACAGCAG 49095 Query 37989 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 38048 |||| || || | ||||| |||||||| |||| |||||||| | | | || ||| Sbjct 49094 GGCGTAGGCGGCGGCGTGCGATTTGTTGAAACCGTAGCCGGCGAACTTTTCCATCAAGTC 49035 Query 38049 CCACACCGCC-CGGATGGCAGCCTCCGAGTAGCC-TCGCTCGCTCGCCCCCTTCTGGAAG 38106 | | | | ||| | || ||| |||| || |||| ||| || ||||| Sbjct 49034 GAAGATCTCGTCGGCTTTTT-CCGCCGTCAAGCCATCTTTCGC-CGCACCGGCGCGGAAG 48977 Query 38107 TTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGG 38166 || || | || ||||| | | |||| |||||| || ||||||||||| || || | | Sbjct 48976 ATCTCGCGGTGCTCGGCCATCTCTTCGGCCTTCTTTTTACCCATGGCGCGGCGCAGCATG 48917 Query 38167 TCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGG 38226 ||||| || || | ||| ||| | | |||||||||| || | |||||||||||| Sbjct 48916 TCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCTCCTGA 48857 Query 38227 TAGATGATGAGCCCGAAGGT 38246 || | |||| ||| |||| Sbjct 48856 TACACCATGATGCCGTAGGT 48837 >seq26 Length=69211 Score = 100 bits (110), Expect = 9e-17 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||| ||| | ||||||||| || || || || ||||| ||||| || ||||| | Sbjct 42549 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 42490 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || | | | ||||| |||||||||||| | | || || ||||||| || Sbjct 42489 CAGGTCATATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCC 42430 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | || || || || ||||| || ||||||||| || ||||| ||| || Sbjct 42429 GGCACCCGATCCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAA 42370 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318 ||| |||| |||||||| ||||||||||||||| | || || || | |||| Sbjct 42369 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 42312 >seq11514 Length=332 Score = 93.3 bits (102), Expect = 1e-14 Identities = 109/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 37837 ACGTCGGGCGGCAGGACCCGAAGGCCCA---TGCGCCTGCACTCGCCGAGGTACGTGGCC 37893 ||||| ||||| || || | ||||| |||| ||| ||| |||| || | || Sbjct 185 ACGTCCGGCGGGAGAACGGTGATGCCCAACTTGCG---GCAGTCGGCGAGATAGATCGCG 241 Query 37894 ATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAG 37953 ||||| ||||||||| || || ||||| |||| ||||||||||||||||||||||| Sbjct 242 GACTTGTCCTTGTCGTCACCGACGGAGGTCAGCAGACCCGCCATGTACTCGGCCGGGTAG 301 Query 37954 TGCGTCTTCAGGTACGCCGTGCGGTA 37979 | || ||| |||||||| || | ||| Sbjct 302 TTCGCCTTGAGGTACGCAGTCCAGTA 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159688637864910